Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu2g02345 ATGGAAACTGGGAGAGAGGATGAGATTGTGGACATGCCCATGTCACCCCCAGTAGTTGGTTCAATTATTAACAATGACTTTTGTCACCACAAAGATATCATGTCTCAGACATATCTGCAGAATAAGTACTCAGAGATTGATATAGACACTGAAGATTCCAACTTTGATCAAAATCGCCCCCTCCCCATATTTCTCAAGTTTGAAGATGTGGAGTATAAGGTGAGAAATAGCCAAGCAGGCTCAGGTAACGTCGTGAAGTCAATGTTGTCCAAGGTAACCACACACCTCACTGTGGAAGAAGATAGATACAAGAAAATTTTGAAGGGCATCACAGGAAGCATAGGACCTGGTGAAATTCTTGCGTTGATGGGTCCTTCTGGCAGTGGGAAGACAACCTTGTTGAGAGTTATAGGAGGAAGGCTAGTTGACAATGTAAAGGGAAAAGTAACTTACAATGATGTTCGTTTCAGTCCAGCTCTCAAGAGGAGGATTGGGTTTGTGACACAAGAAGATGTGCTTTTCCCACAGTTAACAGTTGAAGAAACCTTAGTCTTCTCTGCACTTTTGAGGCTACCAGGCAGTATGAGCAAGCAGCAAAAGTATGCAAAAGTAGATACCACCATCAAGGAGCTAGGCCTAGAAAGATGTCGTCACACAAAAATAGCTGGAGGATATCTCAAAGGAATATCAGGAGGAGAAAGGAAGAGAACCTGCATTGGCTCTGAAATTCTTGTTGATCCTTCACTATTGCTACTTGATGAACCAACTTCTGGCCTTGATTCCTCCTCAGCAAACAAACTCCTTCTCACTCTTCAAGGACTTGCCAAGGCTGGAAGGACCATAATCACAACAATACACCAGCCATCGAGTAGAATCTTTCACATGTTTGACAAACTACTTCTGATATCAGAAGGCTATCCTGTTTACTATGGAAAAGCTAAGGAAACAATAGAGTACTTCTCATTTTTGAGATTCACCCCTCAAATACCGATGAATCCTGCAGAGTTCTTGCTTGACTTGGCAACTGGACAAGTGAATGACATAAGTGTTCCACCAGATATCTTTCAAGATCAAGAATCTTCTGACCCTTCAAAAGTTGTTATTGAACTCAAATACAAATCTCTACTGGAGCCAAAAGAAAAAGAACAGAATCATAGAGTAGCAAGCACACCAGAACACCTTCAATTAGCAATTCAGGTTAAGATGGAGTGGACATCTAGTTGGTTGGACCAATTTATGATTCTCTCCAGGAGAACATATAAAGCAAGAAGAAAGGAATACTTTGATAAGCTAAGACTAGTTCAAGCACTTGGGATTGCACTTGTGTTGGGGCTCCTTTGGTGGAAATCTTCAATCAATACTGAAGCTGGACTCAGAGATCAGGTTGGTTTAGCATTCTACATCTGTATATTCTGGACATCTTCATGCATTTTTGCATCAGTCTATGTCTTTCCATTTGAAGAGTACTACTTGGTCAAAGAAAATAAAGCTGACATGTACAGATTAAGCGTATACTATGCATGTAGCACTCTATGTGACATGGTGGCCACCGTTTTCTATCCTACTTTTTTCATGCTCATCTTGTACTTCATGGCTGGCTTTAACAGAGCTGTTGCTTCCTTCTTTTTGACACTATTAACTATTCTGTTGATAGCTATAACAAGTCAAGGGGTAGGTGAAATGTTTGGAGCTGCAATTATGAGTGTTAAAAGAGCAGGTACTGCTGCTACTTTGCTACTAATGTTATTCCTTCTCACAGGTGGCTACTATGTCCAGCACATACCAAAGTTCATGAGATGGTTGAAGTATTTATCCTTCATGTACTATGGTTTTAGGCTTCTTCTAAAAGTGCAGTATTCTGGAGATCAGTTATATGATTGTGGAAGCAAGGGAGGGTGCAGGACCCTGCAGAGTTCTCCAACGTTTGACAATGTAAACTTGAAGGGTGGATTGAAAGAAGTGTGGATTCTGCTAGCTATGGCATTAATCTTTCGGTTGTTGGCTTACTTGTGTCTTCTGCATCACTGGCAAACACTGTCACCTCTGTTACATCACCTCACCATGGAACTTGTTCCATACTCTGAACCCTCCTCCACCTCCCCGGCATGGCAGGACATGTTCCGATCCGCCTCCTCCCGCCACCCATCCTCCGCCCCATCTTCCCACGCGCCGCCCGAGAAACACCACGCGCCCTCTCCTCCCTCACACGCGCCGTCCAATCCGTCATCCGGCGGCGACCAAGATGGAAAAAACACATTTTCCGGCGATGCCCAGGTGCGGTTGGCCCTTTACATAGCCATGGCCCATGCGGGTCTTGCATTCGCTATTTTTATTCTCTACACGTTCTCCAAGCTTCTAGAAGAGTATTTGAGACCTCTCCAATGGGCCGTGCTGTGTTCTATTCCCCTCAGGGGCATTCAGCAGACCCTCGTTGCGTTTTGGTCCGAACCACTCCAACTGGGTCTCACAGAAACCGTTCTAGCTGTTCCTGTTGCTGTTTTCAGGGTTTTTGTCGGTACACTCGTTGAGATTCGTGAAGCGTCTTTCAGAGTCATTTTGAGGACGCCAAAGCCTCAGCAGAACCTCCCCTCGAGGAAGCGTAGTGGGTTCTCCAAGCTGCTTCGTTTGCTTGTGTCTTTCGGGATTTTCATCATTGCTTATGAGAAGATTGGAGGGTTTGGGGCTTTATCACTTCTTATTTTGGGATTTTTGTTTAGTTCAAACAATGTGGATTCCACTATGCACACTTTGTCTTCTTTTAGGAGCCTTAGTTTCAGGCGTAGTGCAATTAGTGCCTTTTTCACCAGAGGGATACTGAGGAGGTTGAAGATTATTGTGGCAGTTGGACTCATTGTTGGCATGATTGTGGGGTTTTTGAGTGGGGTGATTTTTTTCTCTTACAAGATTGGTGTTGAAGGGAAAGACGCAGTGATATCATTGAAATTGCATGTGGAGGAGAGCAATTATGCTGAGAAGATTGGTGTGAAGAAGTGGATGGATGAGAATGATGTTGCTGGGATGGTGGATAGTTACACTACAAAGATATATGAGACTGTTTCTGATCAGATAGATGGGTTGGCCGTGCAGTATAACATGACTGAATTTGTCTCTGGCATTAAGCATTTTGTGATATCTAATCAGGGAAACTCCTCAGTGCCATCCAAAGCCCTTATGACTCCCTCACCTTACGCTGAGAAGTTCCTGAGCTTGAAAACCAGGGTTAGGAACCGCGAATGGGGCCAGATTTATGCAGAGGTTGATTCAATTTTGCGGGAGCTTGTCATCACTCGTGAGGATTTGGTTGAAAAGGCAAAAGGGTTTGCCTTCAAAGGAATTGATGTGTCTCAACAAATTTTCGCCAGTAGTAGAACTGTGCTTGGCAGCAGTTCAAAGTTTATGCTTTCTATGGCTAATTCTATAATCTCTGGAGCTGCTGAGGTTATCAATTTTGTCTCTCAGTCAATGGTGTTTATTTGGGTTTTGTATTACCTCATCACATCAGAGAGTGGTGGGGTAACAGAACAAGTGATGTACATGCTTCCAATTTCAAATGCTGCTAGGGTCAGATGTGTTGAGGTTTTGGATAAAGCTATTTCAGGAGTCCTTTTGTCCACTGCTGAAATTGCATTTTTTCAAGGGTGTCTTACTTGGCTTTTGTTTAGGTTGAACAAAATACATTTCTTGTACATGTCAACTGTTCTTGCATTCATAAGTCCTCTCCTTCCAATATTTCCACCTTGGCTTGCAACAATTCCAGCAGCCTTGCAATTGGTGTTGGAAGGCAGATACATAATGGCCATTGTGTTGTCTGTTGTTCACCTTTTTCTCATGGACTATGGAGCGTCAGAGATTCTATTAGACGTGCCTGGGAATAGTGCATACCTCACTGGGCTAAGCATAATTGGTGGGATGACATTGTTCCCTTCTGCTCTGGAGGGAGCTATCATGGGGCCATTAATTACTACAGTTATGATTGCAGTGAAGGATTTGTATGCTGAATTTGTGTTGCAAGAACCTAAGGACAAGGCCAAGCAGAAAGCCAGCTAG 4047 0.4339 METGREDEIVDMPMSPPVVGSIINNDFCHHKDIMSQTYLQNKYSEIDIDTEDSNFDQNRPLPIFLKFEDVEYKVRNSQAGSGNVVKSMLSKVTTHLTVEEDRYKKILKGITGSIGPGEILALMGPSGSGKTTLLRVIGGRLVDNVKGKVTYNDVRFSPALKRRIGFVTQEDVLFPQLTVEETLVFSALLRLPGSMSKQQKYAKVDTTIKELGLERCRHTKIAGGYLKGISGGERKRTCIGSEILVDPSLLLLDEPTSGLDSSSANKLLLTLQGLAKAGRTIITTIHQPSSRIFHMFDKLLLISEGYPVYYGKAKETIEYFSFLRFTPQIPMNPAEFLLDLATGQVNDISVPPDIFQDQESSDPSKVVIELKYKSLLEPKEKEQNHRVASTPEHLQLAIQVKMEWTSSWLDQFMILSRRTYKARRKEYFDKLRLVQALGIALVLGLLWWKSSINTEAGLRDQVGLAFYICIFWTSSCIFASVYVFPFEEYYLVKENKADMYRLSVYYACSTLCDMVATVFYPTFFMLILYFMAGFNRAVASFFLTLLTILLIAITSQGVGEMFGAAIMSVKRAGTAATLLLMLFLLTGGYYVQHIPKFMRWLKYLSFMYYGFRLLLKVQYSGDQLYDCGSKGGCRTLQSSPTFDNVNLKGGLKEVWILLAMALIFRLLAYLCLLHHWQTLSPLLHHLTMELVPYSEPSSTSPAWQDMFRSASSRHPSSAPSSHAPPEKHHAPSPPSHAPSNPSSGGDQDGKNTFSGDAQVRLALYIAMAHAGLAFAIFILYTFSKLLEEYLRPLQWAVLCSIPLRGIQQTLVAFWSEPLQLGLTETVLAVPVAVFRVFVGTLVEIREASFRVILRTPKPQQNLPSRKRSGFSKLLRLLVSFGIFIIAYEKIGGFGALSLLILGFLFSSNNVDSTMHTLSSFRSLSFRRSAISAFFTRGILRRLKIIVAVGLIVGMIVGFLSGVIFFSYKIGVEGKDAVISLKLHVEESNYAEKIGVKKWMDENDVAGMVDSYTTKIYETVSDQIDGLAVQYNMTEFVSGIKHFVISNQGNSSVPSKALMTPSPYAEKFLSLKTRVRNREWGQIYAEVDSILRELVITREDLVEKAKGFAFKGIDVSQQIFASSRTVLGSSSKFMLSMANSIISGAAEVINFVSQSMVFIWVLYYLITSESGGVTEQVMYMLPISNAARVRCVEVLDKAISGVLLSTAEIAFFQGCLTWLLFRLNKIHFLYMSTVLAFISPLLPIFPPWLATIPAALQLVLEGRYIMAIVLSVVHLFLMDYGASEILLDVPGNSAYLTGLSIIGGMTLFPSALEGAIMGPLITTVMIAVKDLYAEFVLQEPKDKAKQKAS 1348
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu2g02345 1348 Pfam ABC-2 type transporter 286 346 IPR043926 GO:0140359
Vimu2g02345 1348 Pfam ABC-2 type transporter 411 619 IPR013525 GO:0016020|GO:0140359
Vimu2g02345 1348 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 65 329 IPR003439 GO:0005524
Vimu2g02345 1348 Pfam ABC transporter 107 257 IPR003439 GO:0005524
Vimu2g02345 1348 SMART AAA_5 116 307 IPR003593 GO:0016887
Vimu2g02345 1348 MobiDBLite consensus disorder prediction 710 751 - -
Vimu2g02345 1348 Pfam AI-2E family transporter 1115 1326 IPR002549 -
Vimu2g02345 1348 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 104 323 IPR027417 -
Vimu2g02345 1348 Gene3D - 91 323 IPR027417 -
Vimu2g02345 1348 PANTHER ABC TRANSPORTER G FAMILY MEMBER 28 52 669 - -
Vimu2g02345 1348 CDD ABCG_EPDR 103 311 - -
Vimu2g02345 1348 FunFam ABC transporter G family member 22 94 323 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu2g02345 Vimu-Chr2 18931500 18939039 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu2g02345 105 290 Calmodulin-binding Proteins AT2G36910 30.144 1.77e-12 70.5