LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vimu2g02342	ATGTCTCATATGATGATTAATGAAGACAGCAATAACATCTATGATTTAAACTCTGAGGAATGGAGGAAGATTATAGAATCCCTAAATGAAGAAGATTCATTGAGTGTAGATGAGATTTTAGAAGAAATTAATGATGAATTATCCAAACATTCATCTACTCAGGTTCCTGTTACCGTGGATCCTCAATTAGATATTTCACCAGATCCAATGACAATATTTACAAATAATATTCAAAATTTTGGTGAATATCCTTTTGTTGGTGTTCATGACCAAGGTGTTAATTTGGTTCATAGTCATGTTCTCACTCCTTTCAATGATGTTCGTGCTGGTCATAATATTATACTTCCTTCCCCTCGTAACACTACCTTTTCCAATCATATTGAGTCTGGTTGGATTCAAATGTCCAACAACTCAAATCACTTATCTTCTTACAAATATAAGCCACATTGCAAACGATACGAGCGTTGGACAGAAAATGAACACAGACTATTTCTTCTTGGACTTAAATCTTGTGGTGAAGGCAATTGGAAAAGCATTTCAGAATTATACGTTGTATCAAAGTCTCCCTCTCAAGTATCAAGTCATGCTCAAAAGTATAAGATTCATCAAAAAACATCAATGCAAAATAAGAAGAGAAAAAGTATTCACGAGATTTCTATTGAGCCTTCCAAGCATGTTATCCCTACTCCTGTCACGTCGTTGGAGGAAATATTATCCAAAGATGATGTGTTGAATTGTGCAAATCACATGGAAAACTACAATAACTCAATTGTCACAGTTCCTCGCAAGAAATGCAAGCATTGGACTGAAGATGAACACAAGTTATTTCTCCTCGGACATGCCAAATATCAAGAAAATTGGAAAGAAGTTTCAAAAAATTTTGTCCCCTCAAAAACTCCAACCCAAATTGCTAGTCATGCTCAAAAATACTTCCTTCGTCAAAATGTCCCAGAGCACCAGAGAAAAAGGAAAAGCATTCATGACAAAACATTGCAGGACATTACTAGTATTGTAGCTCATTCTTACATTTGGGTTCCTCCTGAACTTTTAAATGATAAGTAG	1062	0.3503	MSHMMINEDSNNIYDLNSEEWRKIIESLNEEDSLSVDEILEEINDELSKHSSTQVPVTVDPQLDISPDPMTIFTNNIQNFGEYPFVGVHDQGVNLVHSHVLTPFNDVRAGHNIILPSPRNTTFSNHIESGWIQMSNNSNHLSSYKYKPHCKRYERWTENEHRLFLLGLKSCGEGNWKSISELYVVSKSPSQVSSHAQKYKIHQKTSMQNKKRKSIHEISIEPSKHVIPTPVTSLEEILSKDDVLNCANHMENYNNSIVTVPRKKCKHWTEDEHKLFLLGHAKYQENWKEVSKNFVPSKTPTQIASHAQKYFLRQNVPEHQRKRKSIHDKTLQDITSIVAHSYIWVPPELLNDK	353

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vimu2g02342	353	SUPERFAMILY	Homeodomain-like	261	315	IPR009057	-
	Vimu2g02342	353	ProSiteProfiles	SANT domain profile.	263	315	IPR017884	-
	Vimu2g02342	353	SUPERFAMILY	Homeodomain-like	150	204	IPR009057	-
	Vimu2g02342	353	ProSiteProfiles	Myb-type HTH DNA-binding domain profile.	147	204	IPR017930	-
	Vimu2g02342	353	ProSiteProfiles	Myb-like domain profile.	260	311	IPR001005	-
	Vimu2g02342	353	NCBIfam	myb-like DNA-binding domain, SHAQKYF class	151	203	IPR006447	GO:0003677
	Vimu2g02342	353	NCBIfam	myb-like DNA-binding domain, SHAQKYF class	263	314	IPR006447	GO:0003677
	Vimu2g02342	353	CDD	SANT	155	200	IPR001005	-
	Vimu2g02342	353	SMART	sant	264	313	IPR001005	-
	Vimu2g02342	353	SMART	sant	152	202	IPR001005	-
	Vimu2g02342	353	Gene3D	-	153	205	-	-
	Vimu2g02342	353	ProSiteProfiles	Myb-type HTH DNA-binding domain profile.	261	315	IPR017930	-
	Vimu2g02342	353	PANTHER	TRANSCRIPTION FACTOR KUA1	254	334	-	-
	Vimu2g02342	353	ProSiteProfiles	SANT domain profile.	154	204	IPR017884	-
	Vimu2g02342	353	Pfam	Myb-like DNA-binding domain	155	200	IPR001005	-
	Vimu2g02342	353	Pfam	Myb-like DNA-binding domain	267	311	IPR001005	-
	Vimu2g02342	353	CDD	SANT	268	311	IPR001005	-
	Vimu2g02342	353	Gene3D	-	267	315	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vimu2g02342	Vimu-Chr2	18881813	18884246	Proximal

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	MYB	Vimu2g02342		Myb_DNA-binding	6.6e-11	CL0123

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vimu2g02342	-		-	vra:106754347	253.062