Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu2g02332 ATGAAAATGGTGCTGGGAGGTCTGAGAAACCTTTTGGATTCCCTTGGTGTATGCGTATATGCTTTGAAAGCCTTAGATAATCTGCAATTACTGAAAATGGTACCAAAATTACCAAGGTATCTCTGCCTGCCAATGGATGCTAAGTCGGTTGTAGAATTAATGGAGTCTTCTAACGAGGTTCATTTTTCTGGATTTCACATGGATGGTTTTGAGCAAAGAAAGGACAGCATAGAACAACCAACAACCTCGGAAACTGACATGTATAAACAACCTTTTGTCATAGGTGTTGCTGGGGGTGCAGCATCTGGCAAAACAGCAGTTTGTGATATGATCATTCAACAGCTTCATGATCAACGAGTTGTACTTGTTAATCAGGATTCCTTTTACCATAGCTTGTCTGAGGAGGAACTTACACGAGTACAGGATTACAACTTTGACCACCCTGATGCTTTTGATACTGAGCAATTGCTTCGCGTTATGGACAAGTTGAAGCATGGTGAAGCAGTAGATATTCCGAAGTATGATTTTAAGACTTACAAGAGTGATGTGTTAAGAAGGGTGAACCCTTCAGATGTCATAATTTTAGAAGGCATCCTTGTTTTCCATGATCCACGTGTCCGGGAGTTGATGAATATGAAGATATTTGTTGACACAGATGCTGATGTTCGATTGGCAAGAAGGATTAGGCGTGATACTAATGAGAAGGGTCGGGATATTGGAGCAGTTCTTGATCAGTATTCAAAATTTGTTAAGCCAGCTTTTGATGACTTTATTCTTCCAACAAAGAAGTATGCTGATATAATTATACCCCGTGGAGGAGATAATCATGTGGCCATTGATTTGATTGTACAGCATATCCGCACAAAGCTAGGTCAGCATGACCTGTGTAAAATATATCCAAATTTATATGTCATTCAATCAACTTTTCAGATACGGGGTATGCATACGCTGATACGTGATGCTCAAACAACAAAGCATGATTTTATATTTTACTCTGATCGGTTGATTCGATTGGTTGTTGAACATGGTTTGGGGCATCTGCCATTCACAGAAAAGCAAGTAGTCACTCCCACTGGTTCAGTATACACCGGTGTTGATTTTTGTAAAAGGTTGTGCGGTGTCTCTGTAATCAGAAGTGGGGAGAGCATGGAGAATGCTTTGAGAGCATGCTGCAAAGGTATCAAGATTGGTAAAATTCTAATTCACAGGGAAGGCGACAACGGTCAGCAGCTAATATATGAAAAGCTGCCAAATGATATCTCAGACAGGCATGTGTTACTGTTGGACCCTATACTTGGCACAGGTAATTCTGCTGTTCAAGCAATTTCTTTACTCATAAGAAAAGGTGTACCTGAATCCAACATTATATTTCTTAATCTCATATCTGCTCCTAAAGGTGTGCATGTTGTATGCAAAAGTTTTCCAAGAATAAAGATAGTAACATCTGAGATTGAAATCGGTTTGAATGAAGATTTCCGTGTCATACCTGGCATGGGGGAGTTTGGAGATAGGTACTTTGGCACAGATGATGATGATGAACAAATGGTGGTTTCTTCACAGTAG 1563 0.3992 MKMVLGGLRNLLDSLGVCVYALKALDNLQLLKMVPKLPRYLCLPMDAKSVVELMESSNEVHFSGFHMDGFEQRKDSIEQPTTSETDMYKQPFVIGVAGGAASGKTAVCDMIIQQLHDQRVVLVNQDSFYHSLSEEELTRVQDYNFDHPDAFDTEQLLRVMDKLKHGEAVDIPKYDFKTYKSDVLRRVNPSDVIILEGILVFHDPRVRELMNMKIFVDTDADVRLARRIRRDTNEKGRDIGAVLDQYSKFVKPAFDDFILPTKKYADIIIPRGGDNHVAIDLIVQHIRTKLGQHDLCKIYPNLYVIQSTFQIRGMHTLIRDAQTTKHDFIFYSDRLIRLVVEHGLGHLPFTEKQVVTPTGSVYTGVDFCKRLCGVSVIRSGESMENALRACCKGIKIGKILIHREGDNGQQLIYEKLPNDISDRHVLLLDPILGTGNSAVQAISLLIRKGVPESNIIFLNLISAPKGVHVVCKSFPRIKIVTSEIEIGLNEDFRVIPGMGEFGDRYFGTDDDDEQMVVSSQ 520
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu2g02332 520 FunFam Uridine kinase 88 292 - -
Vimu2g02332 520 Pfam Phosphoribulokinase / Uridine kinase family 93 277 IPR006083 GO:0005524|GO:0016301
Vimu2g02332 520 NCBIfam uridine kinase 90 289 IPR000764 -
Vimu2g02332 520 Gene3D - 293 508 IPR029057 -
Vimu2g02332 520 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 79 282 IPR027417 -
Vimu2g02332 520 FunFam Uridine kinase 293 508 - -
Vimu2g02332 520 CDD UMPK 93 289 IPR000764 -
Vimu2g02332 520 PRINTS Uridine kinase signature 235 246 - -
Vimu2g02332 520 PRINTS Uridine kinase signature 221 231 - -
Vimu2g02332 520 PRINTS Uridine kinase signature 91 108 - -
Vimu2g02332 520 PRINTS Uridine kinase signature 257 270 - -
Vimu2g02332 520 PRINTS Uridine kinase signature 121 132 - -
Vimu2g02332 520 PRINTS Uridine kinase signature 166 181 - -
Vimu2g02332 520 CDD PRTases_typeI 366 481 IPR000836 -
Vimu2g02332 520 SUPERFAMILY PRTase-like 292 509 IPR029057 -
Vimu2g02332 520 PANTHER URIDINE KINASE 73 418 - -
Vimu2g02332 520 Pfam Uracil phosphoribosyltransferase 307 508 - -
Vimu2g02332 520 Gene3D - 87 292 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu2g02332 Vimu-Chr2 18715929 18722388 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu2g02332 45 511 PRT Gene Family AT4G26510 83.582 0.0 820
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu2g02332 K00876 - gmx:100792258 916.376
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu2g02332 2 18715929 18722388 Vimu1g00268 1 1555982 1562852 PCT