Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu2g02328 ATGCAGAGTGGAGAACCTTGTTCCATTTGGGCAGAAGGATTTACTCAGCAAAGATCAAATGCAAATGCCACAGAGTGTCTTGGTAGAATGCTAACAGAAGGAATCCACACTGACATCACCATCAATGTTTCTGATGGAAGTATTGGAGCTCATAGAGCTGTTCTTGCTGCAAGATCACCCGTATTCCGCAGCATGTTTTCACATAATCTTCAAGAGAAAGAGTTGTCAACCATAAACATCTCAGATATGTCACTTGATTCATGCCAGACTTTTCTCAATTATCTCTATGGAATCATCAAACATGAAGAGTTTCTGATGCATAGGCTGGCCCTTCTTCGTGCAGCTGACAAGTATGACATATCTGATCTAAGAGATGCATGCCATGAGAGTCTTCTTGAAGACATTGACACAAAAAATGTACTTGAGAGGCTCCAAAATGCATCTCTATATCAGTTGATGAAACTGAAGATGACTTGTATTCGGTATCTTGTGAAGTTTGGCAAAATATATGAAATCCGTGATGATTTCAACACCTTTTTGCATAATGCAGATAGGGATCTGATTGCTGAAGTCTTCCATGAAGTTCTTGATGCTTGGAAAGGATTTTGA 609 0.3957 MQSGEPCSIWAEGFTQQRSNANATECLGRMLTEGIHTDITINVSDGSIGAHRAVLAARSPVFRSMFSHNLQEKELSTINISDMSLDSCQTFLNYLYGIIKHEEFLMHRLALLRAADKYDISDLRDACHESLLEDIDTKNVLERLQNASLYQLMKLKMTCIRYLVKFGKIYEIRDDFNTFLHNADRDLIAEVFHEVLDAWKGF 202
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu2g02328 202 Pfam BTB/POZ domain 30 133 IPR000210 GO:0005515
Vimu2g02328 202 Gene3D Potassium Channel Kv1.1; Chain A 13 165 IPR011333 -
Vimu2g02328 202 SMART BTB_4 37 135 IPR000210 GO:0005515
Vimu2g02328 202 PANTHER OS08G0495500 PROTEIN-RELATED 2 201 IPR044714 -
Vimu2g02328 202 SUPERFAMILY POZ domain 21 133 IPR011333 -
Vimu2g02328 202 ProSiteProfiles BTB domain profile. 37 96 IPR000210 GO:0005515
Vimu2g02328 202 CDD BTB_POZ_ZBTB_KLHL-like 36 118 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu2g02328 Vimu-Chr2 18675305 18675913 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TRAF Vimu2g02328 BTB 3.7e-23 CL0033
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu2g02328 K10523 - gmx:100790186 377.481
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu2g02328 2 18675305 18675913 Vimu2g02328 2 18675305 18675913 ECH
Vimu2g02328 2 18675305 18675913 Vimu1g01633 1 15771894 15773383 PCT