Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu2g02323 ATGAAGATCACTGTCATGACTGTTGATGAACAAATTCTCACGTTGGATGTGGATCCCCACGAATCTGTGGAGAACGTCAAAGCATTGCTCGAGGTTGAGAAGACTAGTGTGCCTCTTCAACAACAACAGCTTCTGTTCAATGGGAAGGAGGTGAGGAATTCTGAGAAGTTGAGTGCCCTTGGTGTTAAGGATGATGATTTGCTGATGATGGTGTCAGGTGCTGCGGCCGGCTCCGCCGCTTCTAGTTTGAATACCGACGGTTCCGCTGTCAACCCTGGTGCTTTCCAGCAGCACATAAGAAGAGATTCTAATTTGATGGGTCAGCTCTTTCAGAGTGATCCAGAGTTGGCACAAGCTATTTTAGGGAATGATCTGAATAGATTGCAAGAAGTTTTGCGATTGCGTCATCGCCAAAGAGATGAATTAAAGCGTCAGAAAGAAGAAGAACTGGCTCTTCTTTATGCTGATCCTTTTGATGTTGAAGCACAAAAGAAGATTGAAGCTGCCATCCGCCAGAAAGGGATTGATGAAAATTGGGCAGCTGCATTAGAACATAACCCCGAAGCTTTTGCTAGAGTGGTCATGTTGTATGTTGATATGGAGGTTAATGGTGTCCCATTGAAGGCATTTGTTGATAGTGGAGCTCAGTCTACCATTATATCAAAAAGCTGTGCTGAGCGTTGTGGATTGTTGAGGCTTTTAGATCAGCGATACAGAGGGATTGCTCATGGAGTTGGCCAGTCAGAAATATTGGGTCGTATACATGTAGCACCTATCAAGATTGGGAGTATATTTTACCCATGCTCATTCTTGGTGCTGGACTCTCCCAATATGGAGTTTCTATTTGGACTGGATATGCTCCGAAAACACCAGTGTATAATTGACTTGAAAGAAAGTGTTTTGCGAGTTGGTGGAGGTGAAGTTTCTGTGCCATTTTTGCAAGAGAAAGACATACCATCTCGGTTTTTAGATGAGGAGAAGTATGCTAAGGAAGCTTCTGGCTCCGGTGGCCAAATTACATCAGGGAGCAATAATCCATCAACTGGAGGCCACCCTTCTGGAGGAGCTTCTAGTGACAGGGCTAAGGATTCTGAATTTGAAGCTAAAGTTGCAAAGCTTGTTGAGTTGGGATTTGAAAGAAATGCAGTTGTAGAAGCTCTTCAGATATTCAATGGCAATGAAGAACAGGCTGCTGGATTTCTTTTCGGCGGCTAG 1215 0.442 MKITVMTVDEQILTLDVDPHESVENVKALLEVEKTSVPLQQQQLLFNGKEVRNSEKLSALGVKDDDLLMMVSGAAAGSAASSLNTDGSAVNPGAFQQHIRRDSNLMGQLFQSDPELAQAILGNDLNRLQEVLRLRHRQRDELKRQKEEELALLYADPFDVEAQKKIEAAIRQKGIDENWAAALEHNPEAFARVVMLYVDMEVNGVPLKAFVDSGAQSTIISKSCAERCGLLRLLDQRYRGIAHGVGQSEILGRIHVAPIKIGSIFYPCSFLVLDSPNMEFLFGLDMLRKHQCIIDLKESVLRVGGGEVSVPFLQEKDIPSRFLDEEKYAKEASGSGGQITSGSNNPSTGGHPSGGASSDRAKDSEFEAKVAKLVELGFERNAVVEALQIFNGNEEQAAGFLFGG 404
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu2g02323 404 SUPERFAMILY Acid proteases 181 296 IPR021109 -
Vimu2g02323 404 CDD Ubl_Ddi1_like 1 71 IPR033882 -
Vimu2g02323 404 Pfam UBA/TS-N domain 367 400 IPR015940 -
Vimu2g02323 404 MobiDBLite consensus disorder prediction 332 361 - -
Vimu2g02323 404 Pfam Aspartyl protease 173 295 IPR019103 GO:0004190|GO:0006508
Vimu2g02323 404 SUPERFAMILY UBA-like 344 404 IPR009060 GO:0005515
Vimu2g02323 404 CDD RP_DDI 180 303 IPR019103 GO:0004190|GO:0006508
Vimu2g02323 404 MobiDBLite consensus disorder prediction 334 354 - -
Vimu2g02323 404 Coils Coil 125 148 - -
Vimu2g02323 404 CDD UBA_scDdi1_like 367 402 - -
Vimu2g02323 404 Pfam Ubiquitin family 3 71 IPR000626 GO:0005515
Vimu2g02323 404 SMART ubq_7 1 73 IPR000626 GO:0005515
Vimu2g02323 404 FunFam DNA damage inducible 1 homolog 2 173 320 - -
Vimu2g02323 404 ProSiteProfiles Ubiquitin domain profile. 1 77 IPR000626 GO:0005515
Vimu2g02323 404 SUPERFAMILY Ubiquitin-like 1 81 IPR029071 -
Vimu2g02323 404 Gene3D - 1 86 - -
Vimu2g02323 404 Gene3D - 339 404 - -
Vimu2g02323 404 SMART uba_6 366 403 IPR015940 -
Vimu2g02323 404 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 361 404 IPR015940 -
Vimu2g02323 404 Gene3D Acid Proteases 174 320 IPR021109 -
Vimu2g02323 404 PANTHER ASPARTYL PROTEASE DDI-RELATED 1 401 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu2g02323 Vimu-Chr2 18643661 18651181 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu2g02323 1 83 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 30.120 6.47e-07 46.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu2g02323 K11885 - gmx:100779464 736.487
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu2g02323 2 18643661 18651181 Vimu2g02323 2 18643661 18651181 ECH