Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu2g02318 CTCCGTTTCCCCTCATCCATCGGCTCTCACCGCCAGAACTCTGTCCGAGCCGTTTCGGCGGAAGCGGTCCAGGTGCGGCTGCCGGCGCCGAGCTTCTACGAGGTGCTGCGAATCCAGCGCCACGCTTCGCCGACGGAGATCAAGTCTGCTTACCGGAGCCTCGCGAAGCTCTATCATCCCGACGCGGTGGTGCGGCATGCGACAGAGGACGTTAGAGCTGGCGAAGCCGCCGACGGAAACTTCATCCAGATCCGAAGCGCGTACGAGACGCTATCGGATCCATCGGCAAGGGCGGAAGACACCGCCAGTTTCCGGTTCCTCTTAGTCGGAATCACTCGTCGACGTTTTACGCAACACGGAGATGGGAAACGGACCAATGCTGGTAGGTGGAGCTTCGGATGCTTAACTTCGCTCGGGCTGGATTGA 426 0.608 LRFPSSIGSHRQNSVRAVSAEAVQVRLPAPSFYEVLRIQRHASPTEIKSAYRSLAKLYHPDAVVRHATEDVRAGEAADGNFIQIRSAYETLSDPSARAEDTASFRFLLVGITRRRFTQHGDGKRTNAGRWSFGCLTSLGLD 141
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu2g02318 141 Gene3D DnaJ domain 17 107 IPR036869 -
Vimu2g02318 141 SUPERFAMILY Chaperone J-domain 19 98 IPR036869 -
Vimu2g02318 141 CDD DnaJ 32 93 IPR001623 -
Vimu2g02318 141 SMART dnaj_3 30 96 IPR001623 -
Vimu2g02318 141 ProSiteProfiles dnaJ domain profile. 31 120 IPR001623 -
Vimu2g02318 141 PANTHER CHAPERONE PROTEIN DNAJ 11, CHLOROPLASTIC-LIKE 10 126 - -
Vimu2g02318 141 Pfam DnaJ domain 32 98 IPR001623 -
Vimu2g02318 141 PRINTS DnaJ domain signature 51 66 IPR001623 -
Vimu2g02318 141 PRINTS DnaJ domain signature 76 96 IPR001623 -
Vimu2g02318 141 PRINTS DnaJ domain signature 33 51 IPR001623 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu2g02318 Vimu-Chr2 18593732 18594545 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu2g02318 33 98 C2H2 Transcription Factor Family AT1G74250 43.939 4.30e-09 52.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu2g02318 - - var:108320973 178.718
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu2g02318 2 18593732 18594545 Vimu2g02318 2 18593732 18594545 ECH
Vimu2g02318 2 18593732 18594545 Vimu1g00265 1 1540709 1541134 PCT