Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu2g02317 ATGGAGACTCGGGTTGAAGGGAAACCTACTCGTCTTGCATCAGGGTTCTCAGATAACTTGTCTGAGACTTGCAAGATGGGTACTCCAAATGGAAGAGGAATGCACAAGTACGATGATGAAATTCCTTTTGACTCCGAAATAAATTATCACCAGTCAGAATCTAGTCTGGTGGATGTACTTGGATCACATTCTGGAGAATCTCTGACTGTTCATCATGAAACGCTGGCTGGTATTGTTTATAGGAGCATACGAGTTGTGATTTTCTCTAACAAACTCAACTTGCTTATACCTTTTGGGCCTCTTGCAATTCTTGTGCAGAAGTTGACTGCTCATCCTGGTTGGGTCTTCGCTCTGAGTTTGTTGGGTATAATGCCTATGGCGGAGCGGTTAGGTTATGCTACCGAGCAGCTGGCATTTTACAGTGGAGATACTGTTGGGGGTCTTTTAAATGCTACATTTGGAAATGCAACAGAATTGATCATCTCAATATATGCACTGAAAAGTGGAATGACACGGGTTGTCCAGCTCTCTTTGCTGGGATCAATTTTGTCCAATATGTTACTAGTGCTTGGATGTGCATTCTTATGCGGTGGGATTGTTAATCATGAGAAAGAACAAGTGTTTAACAAGGCAACTGCTTCTGTGAATTCAGGATTACTGTTGATGGCAGTCATGGGCATAGTTTTTCCAGCTGTTCTACACTACACGCATACCGAGGTTCGTGTTGGGAAGTCAGAGTTGTTCCTTTCGAGATTCAGCAGCTGTGTCATGCTTGTGGCCTATGCTGCATACCTGTTTTTTCAGTTAAAAAGTCAAAGAAATCTCTATGTCTCTGTGAACGAGGAAGAGGGTCAGAGTGGAAACGACTCAAATGACGATGAATCACCAGATATTTCGAAATGGGAATCAATAATATGGCTTTCCGTTATGACTGCTTGGATATCAATCTTGTCTGAATACTTGGTTGGCGCTATAGAGGGAGCATCTACTGCATGGGACATTCCAATTGCATTTATCAGTGTCATATTGCTTCCGCTAGTGGGGAATGCGGCTGAGCATGCCAGTGCTATAATGTTTGCCATGAAAGATAAACTTGACATTTCCCTAGGGGTTGCAATAGGCTCATCCACACAGATATCTATGTTTGTGATACCATTTTGTGTTGTTATTGGCTGGATAATGGGGAACTCTATGGACTTGAACTTTCAACTATTTGAAACTGCAGCACTATTTCTTACTGTTATAGTTCTAGCCTTCATGTTGCAGGAAGGAACTGCTAATTACTTCAAAGGATTAATGCTTATTCTTTGCTATCTGATTGTGGCAGCCAGTTTTTATGTACATATAGATTCCTCTGAATAG 1362 0.417 METRVEGKPTRLASGFSDNLSETCKMGTPNGRGMHKYDDEIPFDSEINYHQSESSLVDVLGSHSGESLTVHHETLAGIVYRSIRVVIFSNKLNLLIPFGPLAILVQKLTAHPGWVFALSLLGIMPMAERLGYATEQLAFYSGDTVGGLLNATFGNATELIISIYALKSGMTRVVQLSLLGSILSNMLLVLGCAFLCGGIVNHEKEQVFNKATASVNSGLLLMAVMGIVFPAVLHYTHTEVRVGKSELFLSRFSSCVMLVAYAAYLFFQLKSQRNLYVSVNEEEGQSGNDSNDDESPDISKWESIIWLSVMTAWISILSEYLVGAIEGASTAWDIPIAFISVILLPLVGNAAEHASAIMFAMKDKLDISLGVAIGSSTQISMFVIPFCVVIGWIMGNSMDLNFQLFETAALFLTVIVLAFMLQEGTANYFKGLMLILCYLIVAASFYVHIDSSE 453
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu2g02317 453 FunFam Vacuolar cation/proton exchanger 143 282 - -
Vimu2g02317 453 Gene3D - 141 282 IPR044880 -
Vimu2g02317 453 Gene3D - 290 447 IPR044880 -
Vimu2g02317 453 NCBIfam calcium/proton exchanger 95 446 IPR004798 GO:0006816|GO:0015369
Vimu2g02317 453 PANTHER VACUOLAR CALCIUM ION TRANSPORTER 64 450 IPR004713 GO:0006812|GO:0008324|GO:0016020
Vimu2g02317 453 FunFam Vacuolar cation/proton exchanger 291 447 - -
Vimu2g02317 453 Pfam Sodium/calcium exchanger protein 114 269 IPR004837 GO:0016020|GO:0055085
Vimu2g02317 453 Pfam Sodium/calcium exchanger protein 304 444 IPR004837 GO:0016020|GO:0055085
Vimu2g02317 453 NCBIfam calcium/proton exchanger 83 445 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu2g02317 Vimu-Chr2 18546916 18552798 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu2g02317 61 453 Antiporters AT1G55730 74.046 0.0 592
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu2g02317 K07300 - gmx:100799276 809.675
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu2g02317 2 18546916 18552798 Vimu2g02317 2 18546916 18552798 ECH