LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vimu2g02316	ATGGGGAGCGACAGCGAGACAGAGAGATCGGTGCAAAAGGAGAAGGAGAAGAAGAAGATGCAGTCTCTAGCTCCCATAGCTAAGCCGCTTGCTGGCAAGAAGCTTTGCAAGCGTACCCTTAAACTTGTTCGCAGAGCCGCCGAACACAAATGCTTAAAGAGAGGAGTCAAGGAGGTCGTTAAAAGCATTAGGAGAGGTCATAAAGGATTCTGTGTTATCGCTGGCAACATTTCGCCGATTGATGTCATCACCCATGTTCCCGTTCTCTGTGAAGAATCTGACATTCCATACGTATATGTCCCATCCAAAGAAGATCTTGCTGGTGCAGGAGCAACAAAGAGGCCTACTTGCTGTGTTTTGGTACAGACGAAACCTGCAAAGGGTGAATTAGAGCAAGGGGAACAAGAGAAACTAAAGTCTGACTATGATCAAGTTGTGTCGGAAGTTAAGAAGCTTACAGCTTCACTTTTTTGA	474	0.4599	MGSDSETERSVQKEKEKKKMQSLAPIAKPLAGKKLCKRTLKLVRRAAEHKCLKRGVKEVVKSIRRGHKGFCVIAGNISPIDVITHVPVLCEESDIPYVYVPSKEDLAGAGATKRPTCCVLVQTKPAKGELEQGEQEKLKSDYDQVVSEVKKLTASLF	157

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vimu2g02316	157	PRINTS	Ribosomal protein L7A/RS6 family signature	71	84	IPR018492	-
	Vimu2g02316	157	PRINTS	Ribosomal protein L7A/RS6 family signature	52	66	IPR018492	-
	Vimu2g02316	157	PRINTS	Ribosomal protein L7A/RS6 family signature	97	111	IPR018492	-
	Vimu2g02316	157	PRINTS	Ribosomal protein L7A/RS6 family signature	87	97	IPR018492	-
	Vimu2g02316	157	Pfam	Ribosomal protein L7Ae/L30e/S12e/Gadd45 family	40	124	IPR004038	-
	Vimu2g02316	157	MobiDBLite	consensus disorder prediction	1	22	-	-
	Vimu2g02316	157	FunFam	H/ACA ribonucleoprotein complex subunit NHP2	20	152	-	-
	Vimu2g02316	157	Gene3D	-	17	154	IPR029064	-
	Vimu2g02316	157	PANTHER	RIBOSOMAL PROTEIN L7AE FAMILY MEMBER	14	151	-	-
	Vimu2g02316	157	MobiDBLite	consensus disorder prediction	1	23	-	-
	Vimu2g02316	157	PRINTS	High mobility group-like nuclear protein signature	55	65	IPR002415	GO:0003723\|GO:0005730
	Vimu2g02316	157	PRINTS	High mobility group-like nuclear protein signature	38	53	IPR002415	GO:0003723\|GO:0005730
	Vimu2g02316	157	PRINTS	High mobility group-like nuclear protein signature	25	38	IPR002415	GO:0003723\|GO:0005730
	Vimu2g02316	157	PRINTS	High mobility group-like nuclear protein signature	99	111	IPR002415	GO:0003723\|GO:0005730
	Vimu2g02316	157	SUPERFAMILY	L30e-like	22	132	IPR029064	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vimu2g02316	Vimu-Chr2	18543762	18544947	Dispersed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vimu2g02316	52	151	Cytoplasmic Ribosomal Protein Gene Family	AT2G47610	26.733	1.04e-06	45.1

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vimu2g02316	K11129		-	gmx:100305515	295.819