Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu2g02305 ATGGAGGTGAAAAACTCTTTGCCGAGTATTACAAGTGCACTCGTTGCTTATGATGAAGACGGCCATGTTAAAAGGACTGGAAATTTATGGAGTGCTGTGGCTCACATCATCACTGCTGTTATTGGATCTGGTGTTCTATCTCTTGCATGGAGCACTGCCCAGTTGGGATGGATTGGAGGGCCACTTGTAGTGCTTTGTTTTGCAACCGTCACCTATGTTTCTTCATCCCTCCTTTCGGATTGTTATAGAACTTGTGATTCTGGGAAAAGAAACTACTCATACATGGATGCTGTTAGAGTCAATCTTGGTAAAAGAAGGACATGGTTGGCTGGTTTCCTACAATTTTTGACCTGTTATGGGACTAGTTGTGCTTATGTACTCACTACTGCAAATAGTTTAAGAGCAATTCTGAAAGCAAATTGTTATCACAAGGAAGGGCATCAAGCTCGTTGTGCTTATGGGGGCAATACTTATATGATGATTTTTGGAATTGTTCAAATTGTAATGTCATTCATACCAGACCTCCATAACATGGTATGGGTCTCAGTTTCTGCAGCAGTTATGTCCTTTGCATACTCCTTCATTGGACTAGGACTTGGCTTCGCAAAGGTTATAGGAAAAAAGTTTGTACTTGCAGAAAATGGAAGAATTATGGGGAGCATAACAGGAATACCAGCTACTAACCGTGCTAACAAGTTATGGTTAGTCTTCCAAGCACTTGGTGACATTGCTTTTGCTTATCCATATGCTTTGCTCCTTCTTGAGATACAGGACACTCTGAAGTCTACTCCACCAGAAAATCAAACCATGAAAAAGGCTTCCATGGTTGCAATCATTGTGACAACATTCTTCTACCTAGCTTGTGGATGCCTTGGATATGGAGCTTTTGGAAATGATACACCAGGGAACATCTTGACAGGGTTTGGGTTTTATGAGCCTTATTGGCTTGTTGCCTTTGCTAATGCTTGCATTATTCTTCATTTGGTGGGAGGATATCAGATGTACAGTCAACCAATATATACTACTGCTGATAGATGGTGGTCAAAAAGATTCCATGAGATGTATGTGATTTCAACCGTTGGGATTGCAATTTTGTTTCCTTACTTCAACCAAGTTCTGGGAGTGTTAGGAGCTATAAACTTCTGGCCATTGGCTGTATATTTTCCAGTGGAAATCTACTTGCAACAAAAGCAAATTGGAGCTTGGACCAAACAATGGATTCTTCTTAGGATGTTTAGCTTTGTTTGCTTCAATGTCACACTTGTGGGTCTGTTTTTCGATGAACAACTACTTTTGGCAGTGAAACTGTTTAATCCAGCCATTGAGTTTAGGCCATCTGATCAAGAACCATGCAAGATCGAGAAGGTTCAGCAACTGACAGCTCCCCATTGTTGGAAACTCAGAACGGTATGGACTGCAGTGGCACACATAGTGACAGGAGTGATAGGGTCAGGAGTGTTGTCATTGGCATGGAGCATTGCACAGCTTGGTTGGATTGGAGGGCCTCTCATAATCATTTTCTTTGCCTGCATCACTCTTCTTTCTTCTTTCCTTCTCAGCAACACCTACCGTGGTCCAGACCCTGAACTTGGCCCTCATAGGAGCTCCTCATACCTTGATGCTGTTAACCTCCATAAGGGAGAAGGGAATAGCCGTTTCTGTGGTGTTTTTGTGAACGTGAGCTTATATGGTTTTGGAATTGCTTATGTCATTACTGCTGCTATCAGTATGAGAGCAATCCAAATATCAAACTGTTCCCTTGGCAAAGAGGATGAAGGAAAATGTGGATTTGATGGTGCATATTTGATGCTTATTTTTGGGGCTATCCAAGTTGTTCTCTCTCAGACACCCAACTTCCACAATATTCAGTGGTTGTCAATTGTAGCAGCAATTACATCCTTTTTTTATGCTTTCGTAGGAATGTGGCTTTCTGCTGGAAAAATCACGGAAAATGGACATGCTGAGGGTACTATTAGTGGAATTCCTACTTCTAGTGGATTTGATAAAGTATGGCTGGTTGCTCAAGCGCTTGGTGACATAGCATTCTCGTATCCATTCTCTGTAATTCTTATAGAAATACAGGATACTTTGAGGTCGCCTCCACCAGAACACCTAACGATGAAGAGGGCGTCAACAATATCTGTCATTATCACAACATTTTTCTACCTGTGTTGTGGGTGTTTAGGATATGCAGCCTTTGGTAATGAAACACCAGGAAACCTTTTAACAGGGTTTACATCTAATGCACAGCATTGGCTTGTAGACTTTGCGAATGCTTGTATAGTGATTCACCTGGTTGGTGCATATCAGGTGTATAGCCAGCCACTTTTTGCCAATGTTGAGAATTGGCTCCGTTTCAAGTTCCCAGACAGTGAATTTGTGAATCACGTATACTTGTTGAAACTCCCATTGCTGCCAGCTTTCCAACTAAGTTTTCTGAGGCTTTCTTTCAGAACTGCATATGTTGCATCAACAACTGTGATTGCAATGCTCTTTCCCTACTTCAATCAGATTTTGGGAGTTTTGGCCGGAATAATCTATTATCCATTGTCCATATATTTTCCGGTGGAAATGTACTTGAGTCTGAGCAATATTGAGCCATGGACGTCTAAGTGGATCATGCTCAGGGGTTTTAGCACCGTTGGCTTTGTGGTGGGATTAAGTATTGTGAAAACGAACAAAAGTACAGATGGAGTGTGGGATCCGTATCAGTTTCCAGGGTCTCTTCTGCTGCTTGATGATGAAGAACTTTATGACAACGTGAAAAGAGGACAGTGGACACCTGAGGAAGATCACAAACTCTCCTCCTACATTGCTCAGCATGGCACTCGTAACTGGCGTCTCATTCCCAAGAATGCTGGTCTCCAGAGATGTGGGAAGAGCTGCAGGCTAAGGTGGACTAATTACCTTCGTCCTGATCTCAAACATGGCCAATTCTCGGATTCAGAAGAGCAAACCATTGTGAAGCTTCATTCAGTTTTCGGTAACAGATGGTCACTGATAGCAGCCCAGCTGCCAGGACGCACTGACAATGATGTCAAAAACCATTGGAACACCAAGCTGAAAAAGAAACTGTCAGGTATGGGTATAGACCCTGTAACCCACAAGCCATTTTCCCATCTAATGGCCGAAATTGCTACCACATTGGCACCTCCACAGGCAGCTCACTTGGCTGAAGCAGCCCTTGGCTGTTTCAAAGATGAGGTGCTCCACCTTCTTACCAAGAAGCCAATTAATTTCCATGGCCAGCATTCCGCTGCAGTACTGGGGAATAACTTCACTGATTACATTAATTGTAAGCCAGATGAAAAGGACGCAACTGTTGAGAAGATCAAGTTTGACCTATCCAAGGCCATGCAACAAGAATCTGAAATGATGCCTTCAAATAAACCTTGGGACTCCACCGCAAATACATCTGCAAGTTTTGTGATGCCATATAGTGTTTTCCCTACAATATCTGGTTATCAATTCTCCCCGTCATCTTTCGCCAATAAAGGGGATGCATCTCCATGGAGCCAAAGTGTATGCACTGGAAGCACATGCACAGCCCTGGATCGGCAGAGCCAATTGCATGAAAAACTTGAAGAGGAAAATGGTGATGATTCTGAGGCCACGAAGGAAATTCGAAATCTATCCAATATATTCAACTCAGATTGTGTCGTGTGGGATCTACCAGCCGATGATTTAATTAACCCCATGGTTTAA 3705 0.427 MEVKNSLPSITSALVAYDEDGHVKRTGNLWSAVAHIITAVIGSGVLSLAWSTAQLGWIGGPLVVLCFATVTYVSSSLLSDCYRTCDSGKRNYSYMDAVRVNLGKRRTWLAGFLQFLTCYGTSCAYVLTTANSLRAILKANCYHKEGHQARCAYGGNTYMMIFGIVQIVMSFIPDLHNMVWVSVSAAVMSFAYSFIGLGLGFAKVIGKKFVLAENGRIMGSITGIPATNRANKLWLVFQALGDIAFAYPYALLLLEIQDTLKSTPPENQTMKKASMVAIIVTTFFYLACGCLGYGAFGNDTPGNILTGFGFYEPYWLVAFANACIILHLVGGYQMYSQPIYTTADRWWSKRFHEMYVISTVGIAILFPYFNQVLGVLGAINFWPLAVYFPVEIYLQQKQIGAWTKQWILLRMFSFVCFNVTLVGLFFDEQLLLAVKLFNPAIEFRPSDQEPCKIEKVQQLTAPHCWKLRTVWTAVAHIVTGVIGSGVLSLAWSIAQLGWIGGPLIIIFFACITLLSSFLLSNTYRGPDPELGPHRSSSYLDAVNLHKGEGNSRFCGVFVNVSLYGFGIAYVITAAISMRAIQISNCSLGKEDEGKCGFDGAYLMLIFGAIQVVLSQTPNFHNIQWLSIVAAITSFFYAFVGMWLSAGKITENGHAEGTISGIPTSSGFDKVWLVAQALGDIAFSYPFSVILIEIQDTLRSPPPEHLTMKRASTISVIITTFFYLCCGCLGYAAFGNETPGNLLTGFTSNAQHWLVDFANACIVIHLVGAYQVYSQPLFANVENWLRFKFPDSEFVNHVYLLKLPLLPAFQLSFLRLSFRTAYVASTTVIAMLFPYFNQILGVLAGIIYYPLSIYFPVEMYLSLSNIEPWTSKWIMLRGFSTVGFVVGLSIVKTNKSTDGVWDPYQFPGSLLLLDDEELYDNVKRGQWTPEEDHKLSSYIAQHGTRNWRLIPKNAGLQRCGKSCRLRWTNYLRPDLKHGQFSDSEEQTIVKLHSVFGNRWSLIAAQLPGRTDNDVKNHWNTKLKKKLSGMGIDPVTHKPFSHLMAEIATTLAPPQAAHLAEAALGCFKDEVLHLLTKKPINFHGQHSAAVLGNNFTDYINCKPDEKDATVEKIKFDLSKAMQQESEMMPSNKPWDSTANTSASFVMPYSVFPTISGYQFSPSSFANKGDASPWSQSVCTGSTCTALDRQSQLHEKLEEENGDDSEATKEIRNLSNIFNSDCVVWDLPADDLINPMV 1234
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu2g02305 1234 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 920 970 IPR017930 -
Vimu2g02305 1234 ProSiteProfiles Myb-like domain profile. 971 1021 IPR001005 -
Vimu2g02305 1234 FunFam transcription factor MYB80 978 1038 - -
Vimu2g02305 1234 Gene3D - 923 975 - -
Vimu2g02305 1234 SUPERFAMILY Homeodomain-like 920 1017 IPR009057 -
Vimu2g02305 1234 Gene3D - 977 1037 - -
Vimu2g02305 1234 ProSiteProfiles Myb-like domain profile. 918 970 IPR001005 -
Vimu2g02305 1234 FunFam MYB-related transcription factor 922 975 - -
Vimu2g02305 1234 Pfam Transmembrane amino acid transporter protein 26 425 IPR013057 -
Vimu2g02305 1234 Pfam Transmembrane amino acid transporter protein 469 889 IPR013057 -
Vimu2g02305 1234 CDD SANT 926 970 IPR001005 -
Vimu2g02305 1234 CDD SANT 979 1021 IPR001005 -
Vimu2g02305 1234 PANTHER OS05G0424000 PROTEIN-RELATED 28 419 - -
Vimu2g02305 1234 Pfam Myb-like DNA-binding domain 923 970 IPR001005 -
Vimu2g02305 1234 Pfam Myb-like DNA-binding domain 977 1019 IPR001005 -
Vimu2g02305 1234 SMART sant 922 972 IPR001005 -
Vimu2g02305 1234 SMART sant 975 1023 IPR001005 -
Vimu2g02305 1234 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 971 1025 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu2g02305 Vimu-Chr2 18391352 18403759 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu2g02305 469 885 Organic Solute Cotransporters AT1G77380 47.017 5.59e-129 402
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vimu2g02305 Aa_trans 2.2e-87 CL0062
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu2g02305 K24917 - gmx:100801302 736.873