Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu2g02298 GGATCTGTAGACATGCAGTCCAAGTCTGAAACTGCAAATCGACTGAGGTCAGATCCTCATTCCTTTCAACCTGGAAGTGTTTATTCCGAGCCTTGGTGGCGTGGTATTGGTTACAATCCCTTGGCCCAAACAATGGCTGGGGCAAATGCATCCAATTCGTCATCTCTTGAGTGCCCTAATGGTGATTCTGAGTCCAATGAAGAAGGCCAGTCTTTGTCCAATAGCGGGAGGAATGAGGAAGATGATGATGCCACTAAAGAATCGCAGCCTGCTGCTCCTAACGAACCAGGAAATTATGGGCAAGAACAGCAAGGGACGCAGCATACTGCATCATCTGCACCATCCATGAGTGAAGAATGCCTTACTCAGACACCGCAGCTGGAACTCGTTGGTCATTCAATTGCATGTGCTACAAATCCTTATCAAGATCCGTATTATGGGGGCATGATGGCAGCTTATGGTCACCAGCAGTTGGGATATGCTCCTTTTATAGGAATGCCTCATGCCAGAATGCCTTTGCCCCTTGAGATGGCTCAAGAGCCTGTATATGTGAATGCGAAACAGTACCAAGGAATTCTGAGGCGAAGACAAGCCCGTGCTAAAGCAGAACTTGAAAGGAAGCTAATAAAATCTAGAAAGCCATATCTTCACGAGTCTAGGCACCAGCATGCTATGAGACGGGCGAGGGGTACTGGAGGACGATTTGCAAAGAAATCCGATGCTGAGGGTTCAAACAACTCAGGCAAGGAAAAGGATAATGGTACTGATTCTGTCCTATCATCACAATCAATTAGTTCATCTGGTTCTGAACCTTTGCATTCTGACTCTGCGGAAACCTGGAATTCTCCTAACATGCAACAAGATGCAAGAGCAGCAAAAGTACAGAACAGGTTCGAAGCACCTGGTTTCCAAAATGGCAGTGGCTCTTACAATAATCATCACGGTTTGCAATCTTCGGTGTATCATTCATCCTCAGGTGAAAGAGTGGAGGAAGGGGACCGTTCAGGTCAGAAACTAAACCACAATTGA 1029 0.4645 GSVDMQSKSETANRLRSDPHSFQPGSVYSEPWWRGIGYNPLAQTMAGANASNSSSLECPNGDSESNEEGQSLSNSGRNEEDDDATKESQPAAPNEPGNYGQEQQGTQHTASSAPSMSEECLTQTPQLELVGHSIACATNPYQDPYYGGMMAAYGHQQLGYAPFIGMPHARMPLPLEMAQEPVYVNAKQYQGILRRRQARAKAELERKLIKSRKPYLHESRHQHAMRRARGTGGRFAKKSDAEGSNNSGKEKDNGTDSVLSSQSISSSGSEPLHSDSAETWNSPNMQQDARAAKVQNRFEAPGFQNGSGSYNNHHGLQSSVYHSSSGERVEEGDRSGQKLNHN 342
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu2g02298 342 ProSiteProfiles NF-YA/HAP2 family profile. 178 238 IPR001289 GO:0003700|GO:0006355
Vimu2g02298 342 Pfam CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B 180 235 IPR001289 GO:0003700|GO:0006355
Vimu2g02298 342 PANTHER TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED 19 291 IPR001289 GO:0003700|GO:0006355
Vimu2g02298 342 MobiDBLite consensus disorder prediction 250 291 - -
Vimu2g02298 342 MobiDBLite consensus disorder prediction 48 122 - -
Vimu2g02298 342 MobiDBLite consensus disorder prediction 1 34 - -
Vimu2g02298 342 MobiDBLite consensus disorder prediction 213 232 - -
Vimu2g02298 342 MobiDBLite consensus disorder prediction 211 342 - -
Vimu2g02298 342 MobiDBLite consensus disorder prediction 1 24 - -
Vimu2g02298 342 MobiDBLite consensus disorder prediction 74 88 - -
Vimu2g02298 342 MobiDBLite consensus disorder prediction 48 73 - -
Vimu2g02298 342 MobiDBLite consensus disorder prediction 91 122 - -
Vimu2g02298 342 SMART cbf3 177 238 IPR001289 GO:0003700|GO:0006355
Vimu2g02298 342 ProSitePatterns NF-YA/HAP2 subunit signature. 183 203 IPR018362 GO:0003677|GO:0016602
Vimu2g02298 342 Gene3D - 178 240 - -
Vimu2g02298 342 PRINTS CCAAT-binding transcription factor subunit B signature 212 235 IPR001289 GO:0003700|GO:0006355
Vimu2g02298 342 PRINTS CCAAT-binding transcription factor subunit B signature 181 203 IPR001289 GO:0003700|GO:0006355
Vimu2g02298 342 MobiDBLite consensus disorder prediction 300 325 - -
Vimu2g02298 342 MobiDBLite consensus disorder prediction 326 342 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu2g02298 Vimu-Chr2 18288522 18291260 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu2g02298 20 282 CCAAT-HAP2 Transcription Factor Family AT5G12840 53.962 2.36e-88 265
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YA Vimu2g02298 CBFB_NFYA 1.4e-26 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu2g02298 K08064 - gmx:100808378 644.039
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu2g02298 2 18288522 18291260 Vimu2g02298 2 18288522 18291260 ECH
Vimu2g02298 2 18288522 18291260 Vimu1g00258 1 1501879 1503489 PCT