Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu2g02268 ATGACGGAGCAGAGTCATGAATGGAAGAATGAATCTTCGCCTTCAAAACTGTTGCCTATCATTCAAACTCAGTCTTCGCCACCGCACAACTTCAATGATATGTCGGAAACAACCTCCCCCTTCAGCTGCCCTGTTCAAGATGTCGTCGAATCTCTTCCGATGTTGTCGTCGTCTCAAACATCACAACGTGACAACATGCGAGTTCAGTCCAAAAAATCGAAAAGGATAACTTGGACCACAGAAGAGCACAGACGGTTTCTAGAAGCACTGAGTAAATATGAGAAAGGAAACTGGAAAGAAATTTCAGCGTATATTCAAACAAAAAATGTAACTCAAGTAGCGAGTCATGCACAAAAGTATTTTATCCGTCAAGGTAAATCAGAAAAGCAAAAGAAGAGAAAAAGCATTCATGACATGATTTTGGATAACACTACTCATAGTATTGATCATATTCAGAATTCATCTTCTTCTAAAACAAATCCTGCAATTTCACAATTTTATGAGATGCAACCATTGCAAGTGCAACCACGACAATCAATACCTCCTACACAGTTTAACCAGAGACAACCACCGCAGGTGCAACCACTGCAATCTGTACATCATACACAGTTTAACCAGATTCGACCAACACATCAAGTAATGGAGGCGAATTCTTTCAACAACAAAGCTCATCATCCTACACAGTTTGCCCAGATGCAACCAGTACATCCAGTGGTAAGTGTGAATTCCAACAACATAGCTCGTCAACCTGCACGGTTTAATCAACCAGCAACCAACGTCTTCGTGCAGGTTAATCCCGTCAACAACATAATTCATCATCCCTCACAGTTTAATCAAATGCAACCGACTAGAGAAACAGTGTATACTGATGTTAAGAATTGGTCAAGAGGATGA 894 0.406 MTEQSHEWKNESSPSKLLPIIQTQSSPPHNFNDMSETTSPFSCPVQDVVESLPMLSSSQTSQRDNMRVQSKKSKRITWTTEEHRRFLEALSKYEKGNWKEISAYIQTKNVTQVASHAQKYFIRQGKSEKQKKRKSIHDMILDNTTHSIDHIQNSSSSKTNPAISQFYEMQPLQVQPRQSIPPTQFNQRQPPQVQPLQSVHHTQFNQIRPTHQVMEANSFNNKAHHPTQFAQMQPVHPVVSVNSNNIARQPARFNQPATNVFVQVNPVNNIIHHPSQFNQMQPTRETVYTDVKNWSRG 297
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu2g02268 297 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 70 125 IPR017930 -
Vimu2g02268 297 Pfam Myb-like DNA-binding domain 77 121 IPR001005 -
Vimu2g02268 297 NCBIfam myb-like DNA-binding domain, SHAQKYF class 74 124 IPR006447 GO:0003677
Vimu2g02268 297 ProSiteProfiles Myb-like domain profile. 70 121 IPR001005 -
Vimu2g02268 297 PANTHER TRANSCRIPTION FACTOR KUA1 46 235 - -
Vimu2g02268 297 MobiDBLite consensus disorder prediction 11 39 - -
Vimu2g02268 297 SUPERFAMILY Homeodomain-like 71 125 IPR009057 -
Vimu2g02268 297 Gene3D - 76 126 - -
Vimu2g02268 297 ProSiteProfiles SANT domain profile. 78 125 IPR017884 -
Vimu2g02268 297 SMART sant 74 123 IPR001005 -
Vimu2g02268 297 MobiDBLite consensus disorder prediction 1 39 - -
Vimu2g02268 297 CDD SANT 77 121 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu2g02268 Vimu-Chr2 17943579 17944618 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Vimu2g02268 Myb_DNA-binding 3.2e-11 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu2g02268 - - vum:124848279 492.271