Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu2g02267 ATGGCAGAGCAAAGTGTGGATTGGTGGAAGGAATTGAGTTTGGATTGGAATGACTTGATTGATGTGCCATTGGACATCTTCAATCTTCCAGAACCATCTTTTGTCGAAGCTCCTCAGATGTTGCCACTGTCTCAAACATTGGAACACATGCAGTTTCATTCGAACAAAAGAAAAAGGATAACATGGACCAAAGAAGAGCATAGGAGGTTTTTAGAAGGACTTGATATATGTGGAAAAGGAAATTGGAAAAACATTTCAGCCTACATTCAAACAAAGAGTGCAAGTCAAGTGGCAAGCCATGCACAGAAGTATTTTATCCGTCAAAGTAAATCAAAAGAGCAAAAGAAGAGAAAAAGCATTCATGACATGGTTATGGAGAATACTACTCATACTAATAGAAATCTTGCAAGTTCACAATTTTACGAAATGCAACCCTTGAATCCTTACATGAACATGTCTCATCCACAAGAGCTAAATCATATCAATATGACTTATCAACCACGAGAAGAAATGATCAACCAAAATCATATGAATTCCAACAACATATTTGATCATCCAGCAAACTTTAATCAAATGCAACCATCGCAAGCCATACCCTTCAATCCTTACATCGACATGCCTCATCCACCAGAGTTAAATCATATCAATACTTTAAATCATCATCCACAAAATAATGGAATAGATCCCACACAGTTTAATCAAATGCAACCATCATTTGAGAATTTATTCATGTAA 735 0.3619 MAEQSVDWWKELSLDWNDLIDVPLDIFNLPEPSFVEAPQMLPLSQTLEHMQFHSNKRKRITWTKEEHRRFLEGLDICGKGNWKNISAYIQTKSASQVASHAQKYFIRQSKSKEQKKRKSIHDMVMENTTHTNRNLASSQFYEMQPLNPYMNMSHPQELNHINMTYQPREEMINQNHMNSNNIFDHPANFNQMQPSQAIPFNPYIDMPHPPELNHINTLNHHPQNNGIDPTQFNQMQPSFENLFM 244
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu2g02267 244 ProSiteProfiles SANT domain profile. 62 109 IPR017884 -
Vimu2g02267 244 ProSiteProfiles Myb-like domain profile. 54 105 IPR001005 -
Vimu2g02267 244 NCBIfam myb-like DNA-binding domain, SHAQKYF class 58 108 IPR006447 GO:0003677
Vimu2g02267 244 Gene3D - 60 110 - -
Vimu2g02267 244 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 54 109 IPR017930 -
Vimu2g02267 244 Pfam Myb-like DNA-binding domain 61 105 IPR001005 -
Vimu2g02267 244 PANTHER TRANSCRIPTION FACTOR KUA1 54 211 - -
Vimu2g02267 244 SUPERFAMILY Homeodomain-like 55 110 IPR009057 -
Vimu2g02267 244 CDD SANT 61 105 IPR001005 -
Vimu2g02267 244 SMART sant 58 107 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu2g02267 Vimu-Chr2 17933492 17934335 Dispersed/Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Vimu2g02267 Myb_DNA-binding 8.3e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu2g02267 - - vra:106774767 419.083