Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu2g02258 ATGGAGTTCTCTTGGTTCAGAGCCAACAACGATTCAAAAGGCTCTTCCACAGAAACTGATTTAGAAACTGAATGCGTTCATGAAAACAACCCTAGATTAGCTTGGACTCTATTGAAGGGTCTCGCCTTCTGCGTTTCTACTGGTTGCGCGACAGCGGCGAGTTCGATATGGGCATTTAGGGTTCGCTTGGCGCCTGATTGTGCGATTTCCAACACGGTGGTAACAGCGCGACATGGTTCATGCAAGGGGAAGAGGGGGAATACGCATCGTTCGAAGCATTCAGAAACTAAGCAACGTAGAAGGAGCAAGATTAATGAAAGAGATCTCATACCACAAAATGATCAAAAAAGAGACAAGGCATCCTTCTTGTTGGAGGTTATTGAGTATATTCAGTTCCTACAGGACAAGTTACAAATTTATGAGAAGTCTTATGAAGGATGGAGTCAGGAGCCAACAAAGTTAATTCCATGGGTAAAGTTATATGCAACGTTGAAAATTGTCCAAGAGGGAATCCATGGAGAGGATGTTGTTAACCAGAATAGATCGAACAAAAAAAACTGTACTTTCCACAAAGATCTAGTTCCCGAGAGGAAGATGAAGGCACGATTTAAGATTCACAGTTTTGGGGTTTTGCCCTACAGGATACGAGGTTACAGTGATTATTATGGATGA 672 0.4256 MEFSWFRANNDSKGSSTETDLETECVHENNPRLAWTLLKGLAFCVSTGCATAASSIWAFRVRLAPDCAISNTVVTARHGSCKGKRGNTHRSKHSETKQRRRSKINERDLIPQNDQKRDKASFLLEVIEYIQFLQDKLQIYEKSYEGWSQEPTKLIPWVKLYATLKIVQEGIHGEDVVNQNRSNKKNCTFHKDLVPERKMKARFKIHSFGVLPYRIRGYSDYYG 223
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu2g02258 223 CDD bHLH_AtBIM_like 87 157 - -
Vimu2g02258 223 Gene3D - 86 154 IPR036638 GO:0046983
Vimu2g02258 223 Pfam Helix-loop-helix DNA-binding domain 90 134 IPR011598 GO:0046983
Vimu2g02258 223 MobiDBLite consensus disorder prediction 78 111 - -
Vimu2g02258 223 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 86 155 IPR036638 GO:0046983
Vimu2g02258 223 PANTHER BES1-INTERACTING MYC-LIKE PROTEIN 78 192 IPR044295 GO:0003700|GO:0006351|GO:0046983
Vimu2g02258 223 MobiDBLite consensus disorder prediction 82 98 - -
Vimu2g02258 223 Coils Coil 130 150 - -
Vimu2g02258 223 SMART finulus 94 139 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu2g02258 Vimu-Chr2 17766751 17768415 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu2g02258 74 185 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G38860 55.000 3.92e-33 117
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vimu2g02258 HLH 3.5e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu2g02258 - - pvu:PHAVU_008G025500g 143.28