Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu2g02246 ACATGTCAGATTGTCCCCGAAGTCCCTTTAACGTCGCCGCCGTCTGAAACATCACAACATCAACCTACGCAACAGTTTCAGTCGAAGAAACAAAAACGGATAACTTGGACTACAGTGGAGCACAGACGATTTCTGGAAGGACTTAATAAATATGGTAAAGGAGATTGGAAAAATATTTCCTCGTACGTTAAAACAAAAAATTCAACCCAAGTGGCCAGTCATGCACAAAAATATTATCTCCGTAAAAGTAAATCAGAAGAGAAAAAGAAAAGAAAGAGCATTCATGACATGGTTCATCTTCCAGTTTCACAATCTCAGGAGATGTTGATCGGGCTGCCTCAAAATCCAAGGTCTCTGGATACCATAATTCATCCGTTGATACAAGTGCAAGAAGGATTCAATCCTCACATGAACATGCAAATACCCTTCAATCCTTACATGAACATGCACATATTCAATCCTTACATGAACATTCCACAGTCAACACCAGGAATGATGCAGCCAAATCATATGAAGAACATAAATCATCATCCACAACAAATGGAATACAATACACAGTTTAACCAGCTGAATTCTACCAACTACCTACTTCATCATCCCACTCACTTTAAACCTTAA 618 0.3883 TCQIVPEVPLTSPPSETSQHQPTQQFQSKKQKRITWTTVEHRRFLEGLNKYGKGDWKNISSYVKTKNSTQVASHAQKYYLRKSKSEEKKKRKSIHDMVHLPVSQSQEMLIGLPQNPRSLDTIIHPLIQVQEGFNPHMNMQIPFNPYMNMHIFNPYMNIPQSTPGMMQPNHMKNINHHPQQMEYNTQFNQLNSTNYLLHHPTHFKP 205
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu2g02246 205 CDD SANT 35 78 IPR001005 -
Vimu2g02246 205 PANTHER TRANSCRIPTION FACTOR KUA1 24 181 - -
Vimu2g02246 205 SMART sant 32 81 IPR001005 -
Vimu2g02246 205 SUPERFAMILY Homeodomain-like 29 84 IPR009057 -
Vimu2g02246 205 ProSiteProfiles SANT domain profile. 36 83 IPR017884 -
Vimu2g02246 205 MobiDBLite consensus disorder prediction 1 32 - -
Vimu2g02246 205 Pfam Myb-like DNA-binding domain 35 78 IPR001005 -
Vimu2g02246 205 ProSiteProfiles Myb-like domain profile. 28 79 IPR001005 -
Vimu2g02246 205 Gene3D - 34 84 - -
Vimu2g02246 205 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 28 83 IPR017930 -
Vimu2g02246 205 NCBIfam myb-like DNA-binding domain, SHAQKYF class 32 82 IPR006447 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu2g02246 Vimu-Chr2 17617585 17618428 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Vimu2g02246 Myb_DNA-binding 5.3e-11 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu2g02246 - - pvu:PHAVU_006G063000g 144.821