Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu2g02235 ATGTCGTACTCACGGAGGTCAAGGTATTCTACTTCGCCTTCTCCTTTACCATATAAGCGATATGGTAGGTCTGTGTCCAGGTCCCTCTCAAGGTCCATGTCCAGAAGCCGTTCAAGGAGTGTATCAAGGGATGCAGAAAATCCAGGAAACAATCTGTATGTGACAGGATTGTCTCCCAGGATCACCAAGAGGGAACTGGAGAAGCATTTTGCTGCCGAGGGGAAAGTGATAGATGTACATCTGGTGGTTGATCCTTGGACAAGGGAATCCCGTGGGTTTGGTTTTGTGACAATGGAGACTGTTGAGGAGGCCGATAGATGTGTAAAGTATTTGAATCGCTCTGTACTTGAAGGGCGTGTTATTACAGTTGAGAAGGCAAGAAGGCGACGTGGTCGAACCCCAACGCCAGGGAAGTATCTAGGGTTGAGAACTGTTCGTGGGCGACGCCGCTCTCCAAGTTATTCTCCTCGTCGTTCCCCTAGCTATTCTCCTTACAGAAGAAGCTACAGTCGGTCTCCCTATTCTTCAGACCGAAGTAGGAGTCGTTCTTACTCTCCTGACTATGGGAGGAGGCGATCCTATTCTCCATATTACTCACAAAGAAGGAGGTCTTACTCTCCATACTACAGCCGGTACAGGTCTTATGTGCGATATGATCATTATCGACACAGGTCATATTCTCGCTCTCGTTCTCCTTATAGCAGGTCTCCTGTCAGCATGCGTGACAGATCATACTCTCCCTATGACTGGCCGGATGGTCGCTCCTACAGAAGGAACCGTTACAGGTCTGTTTCACGAAGTGCCTCACCCAATGATCGCTATTATGGAAGGCATCGTTACAGGTCTGTTTCTCTCAGTGCCTCACCTAGGCCAAGGAGAAGGTCAAGGAGGAGCTACTCACGGAGTGCCACTCCTGTTTCGAAGAGGAGAGATTCTCCAAGTGTGTCTCCCAGGCCAAGGAGGAGTCCTTCAAGAAGCTCCAAGAAAAGTGCCAAATATTCGAAACAGCGGTCAAGGTCATCCAGTGTGGTTGCAAGTTCAAGATCAGTATCCAGGTCTAACACTCCAAAATCTTCCTCTCCTTCAACTTGA 1092 0.4881 MSYSRRSRYSTSPSPLPYKRYGRSVSRSLSRSMSRSRSRSVSRDAENPGNNLYVTGLSPRITKRELEKHFAAEGKVIDVHLVVDPWTRESRGFGFVTMETVEEADRCVKYLNRSVLEGRVITVEKARRRRGRTPTPGKYLGLRTVRGRRRSPSYSPRRSPSYSPYRRSYSRSPYSSDRSRSRSYSPDYGRRRSYSPYYSQRRRSYSPYYSRYRSYVRYDHYRHRSYSRSRSPYSRSPVSMRDRSYSPYDWPDGRSYRRNRYRSVSRSASPNDRYYGRHRYRSVSLSASPRPRRRSRRSYSRSATPVSKRRDSPSVSPRPRRSPSRSSKKSAKYSKQRSRSSSVVASSRSVSRSNTPKSSSPST 363
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu2g02235 363 MobiDBLite consensus disorder prediction 336 363 - -
Vimu2g02235 363 MobiDBLite consensus disorder prediction 126 199 - -
Vimu2g02235 363 FunFam Serine/arginine-rich splicing factor SR45a 2 134 - -
Vimu2g02235 363 MobiDBLite consensus disorder prediction 224 363 - -
Vimu2g02235 363 MobiDBLite consensus disorder prediction 1 51 - -
Vimu2g02235 363 MobiDBLite consensus disorder prediction 300 321 - -
Vimu2g02235 363 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 50 128 IPR000504 GO:0003723
Vimu2g02235 363 PANTHER TRANSFORMER-2 SEX-DETERMINING PROTEIN-RELATED 38 259 - -
Vimu2g02235 363 MobiDBLite consensus disorder prediction 154 182 - -
Vimu2g02235 363 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 52 121 IPR000504 GO:0003723
Vimu2g02235 363 CDD RRM_SF 52 124 - -
Vimu2g02235 363 Gene3D - 5 134 IPR012677 -
Vimu2g02235 363 SUPERFAMILY RNA-binding domain, RBD 40 153 IPR035979 GO:0003676
Vimu2g02235 363 SMART rrm1_1 51 124 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu2g02235 Vimu-Chr2 17502562 17505120 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu2g02235 51 132 Eukaryotic Initiation Factors Gene Family AT2G36660 34.146 2.32e-08 53.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu2g02235 - - gmx:100808038 230.335
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu2g02235 2 17502562 17505120 Vimu2g02235 2 17502562 17505120 ECH