Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu2g02231 CTGAAGAAGATGAAAAAGAAGGAGAATTCCCTGGTGTTTATGGATGTGTCCATTGATGGGGATCCTGTTAAAAGGTGGGATCCTGTTAAAAGGATGGTTTTCAAGCTTTTATACAATGTTGCTCCTATGACTGCAGAAAACTTTCGTGCATTATGTACAGGAGAAAAAGGTATCAGTCAAAATACTGGAAAACCACTTCACTACAAGGGTTCTTTCTTCCATCAGATAATAAAAGGTTCTATTGTGAAGGGGGGAGATTTTGTCAATCGAAATGGGACAGGTGGAGAAAGTATATATGGTTCAGAGTTCCCGGATGAGTCACCTGTGCTGAAGCATGATGCTCCAGGCCTTCTATCAATGGCAATTGGAAACCGTGACACTCTTGGTTCTCATTTTATTATCACCTTAAAAGCCGATCATCATCTTGATGGGAATCATGTAGTCTTTGGGAAGCTTGTACATGGGCGTGATGTATTAAGGAAAATTGGAGAAATGGGTGATGAAGAAGGGCATCCAACTGTAATTATTAAAATCATTACATGTGGCGAATATAGTAAGGATAGAAAGAGGGTATATAAATCAAAAATGGGAGAAACCAATAATTACGAAACACGGAAGAAGGGAAAACATAACAAATCTTCAAAAGACCGAAGGAAAAGGAAAAGATACTACTCATATGAATTTTGGAGCTCTTCAGATTGTGACACGAAATCTTCACGATCAGAGGAACTTTGGCAAATGGATTTAGCAATGTATAACGGGAAGAGACAATCTTCGGACCCTGACACAAAATCTTCAGAAGCCGAGATAAATAAATCAAAAATGGGAAATAATGGATTTTCTTGGGAGATAAATAAACCAGAAATGGAAACGGATGGGTTTTCTGCGGCACATCATGTGACATTGGATAAGGGAAAACGTTTAAAATACGCAGAAGAGGACCCGGAAGGGATAGAAATCTTCTCAGAAAGCTCTTCAGATTATTACAATAAAGTTTCGGCTGACTCAGATATGTCCTCATCATCCGGCATATATTCTTAA 1041 0.3862 MKKMKKKENSLVFMDVSIDGDPVKRWDPVKRMVFKLLYNVAPMTAENFRALCTGEKGISQNTGKPLHYKGSFFHQIIKGSIVKGGDFVNRNGTGGESIYGSEFPDESPVLKHDAPGLLSMAIGNRDTLGSHFIITLKADHHLDGNHVVFGKLVHGRDVLRKIGEMGDEEGHPTVIIKIITCGEYSKDRKRVYKSKMGETNNYETRKKGKHNKSSKDRRKRKRYYSYEFWSSSDCDTKSSRSEELWQMDLAMYNGKRQSSDPDTKSSEAEINKSKMGNNGFSWEINKPEMETDGFSAAHHVTLDKGKRLKYAEEDPEGIEIFSESSSDYYNKVSADSDMSSSSGIYS 346
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu2g02231 346 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE 12 183 - -
Vimu2g02231 346 MobiDBLite consensus disorder prediction 195 218 - -
Vimu2g02231 346 ProSiteProfiles Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile. 21 183 IPR002130 GO:0000413|GO:0003755
Vimu2g02231 346 Gene3D - 1 192 IPR029000 -
Vimu2g02231 346 MobiDBLite consensus disorder prediction 195 209 - -
Vimu2g02231 346 Pfam Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 30 182 IPR002130 GO:0000413|GO:0003755
Vimu2g02231 346 SUPERFAMILY Cyclophilin-like 9 187 IPR029000 -
Vimu2g02231 346 MobiDBLite consensus disorder prediction 254 282 - -
Vimu2g02231 346 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 131 143 IPR002130 GO:0000413|GO:0003755
Vimu2g02231 346 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 36 51 IPR002130 GO:0000413|GO:0003755
Vimu2g02231 346 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 116 131 IPR002130 GO:0000413|GO:0003755
Vimu2g02231 346 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 73 85 IPR002130 GO:0000413|GO:0003755
Vimu2g02231 346 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 144 159 IPR002130 GO:0000413|GO:0003755
Vimu2g02231 346 FunFam Peptidyl-prolyl cis-trans isomerase CYP95 4 191 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu2g02231 Vimu-Chr2 17431238 17433965 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu2g02231 34 179 U-box Gene Family AT5G67530 37.162 1.78e-16 78.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu2g02231 K09566 - gmx:100800303 339.347