Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu2g02226 ATGAAAGACATAGGAGGAGGTGGTGCCATTATTAATGGATCTAATAACCCTTCAAAGTCTTCTGTTGGTCCTCCTTTGACAGCCATAGAAAGGTTTTTGTGGGGACAACAGAGCCATTCCTCTCAGCAACAGCCACAGAATGTTGCAAACAATATCCATTATGCAAGTGTTTTGGATGGTTTTGGTGGCTCAAACTACAACATTTTTTGGCATAATGGTGGTAGGGAAGTGAACTTTGTTGAAAAGTTTTTAGCAAATGAAGTAGAAGCTCTGAATTGGACACAACAAGTCCCTCCACTGTGTTTGACAGAAGATTTGCATGTGTCAGGGAAGAACAGAAAAGGGGTGGGACGAAAACCTAAGGAAGGGTCTTCTGTACCTTGGATCAAAGGCCAGTGGACTGAAGAAGAAGACAGGAAACTGGTAAAGTTGGTGAAGCAACATGGTACAGGAAAATGGTCTCAGATAGCAGAAAAGTTGGATGGTAGGGCTGGGAAGCAGTGTAGAGAGAGATGGCATAATCATCTGCGTCCTGATATTAAGAAAGATGCTTGGAGTGAAGAAGAAGAAAAAATCTTAGTAAAATATCATGCAGAGTTTGGAAATCGCTGGGCAGAAATTGCTAAACAAATAAAAGGAAGAACCGAAAATGCAATAAAAAACCATTGGAATGCGACAAAGAGGAGACAAAACTCAAGAAGAAAGAACAAAAGAGCAGGAATAGGAAATGGAAAGCCATTGTCTTCTATTCTGCAAGACTACATCAAAAGTCTGTCTCTCAGCAACACTTCAACTTCCTCTGCGGAACAAACATTATTGCCATCAAATGTTGCCACCAACAACAATTTCTCACTAATGTCTGAGTCCTATGATGATGAGGTTTCCTTCATGCAACAATTTTTCGATGAAAACAATGTCATTGCTGAATCTGTTAAGCAGACCAAAACTTTCAACAACTCTTCTGCAGCCTTTGATGGTTATCATCATCAAAGCAGTAACAATAGTCAGGTTCTCACTGAACTCACTCAATCAGGATCTGTTGTTCATTCCAACCTAAACACAAACTCACAAATCTCCTTTTATGAGAGTCTTTTCCTCTCTAAAAGGACTCCTATAGGTTTTGATGTCTGTCTCTCTCATGGAACTGCTGGTTCATCATTTCTCTGCAATAATGGGATTCACAACCAGAACATGGAGTTGCAGTTGGAGAAGCAAAATTGGTTATGGGAAAGAGGGATAGGGATATAG 1248 0.4022 MKDIGGGGAIINGSNNPSKSSVGPPLTAIERFLWGQQSHSSQQQPQNVANNIHYASVLDGFGGSNYNIFWHNGGREVNFVEKFLANEVEALNWTQQVPPLCLTEDLHVSGKNRKGVGRKPKEGSSVPWIKGQWTEEEDRKLVKLVKQHGTGKWSQIAEKLDGRAGKQCRERWHNHLRPDIKKDAWSEEEEKILVKYHAEFGNRWAEIAKQIKGRTENAIKNHWNATKRRQNSRRKNKRAGIGNGKPLSSILQDYIKSLSLSNTSTSSAEQTLLPSNVATNNNFSLMSESYDDEVSFMQQFFDENNVIAESVKQTKTFNNSSAAFDGYHHQSSNNSQVLTELTQSGSVVHSNLNTNSQISFYESLFLSKRTPIGFDVCLSHGTAGSSFLCNNGIHNQNMELQLEKQNWLWERGIGI 415
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu2g02226 415 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 181 231 IPR017930 -
Vimu2g02226 415 PANTHER MYB PROTEIN-RELATED 116 284 - -
Vimu2g02226 415 MobiDBLite consensus disorder prediction 226 245 - -
Vimu2g02226 415 ProSiteProfiles Myb-like domain profile. 130 176 IPR001005 -
Vimu2g02226 415 MobiDBLite consensus disorder prediction 1 22 - -
Vimu2g02226 415 MobiDBLite consensus disorder prediction 226 240 - -
Vimu2g02226 415 Pfam Myb-like DNA-binding domain 133 191 - -
Vimu2g02226 415 Gene3D - 129 181 - -
Vimu2g02226 415 SUPERFAMILY Homeodomain-like 127 223 IPR009057 -
Vimu2g02226 415 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 130 180 IPR017930 -
Vimu2g02226 415 CDD SANT 184 227 IPR001005 -
Vimu2g02226 415 Gene3D - 183 244 - -
Vimu2g02226 415 ProSiteProfiles Myb-like domain profile. 177 227 IPR001005 -
Vimu2g02226 415 SMART sant 181 229 IPR001005 -
Vimu2g02226 415 SMART sant 129 178 IPR001005 -
Vimu2g02226 415 FunFam Transcriptional activator Myb isoform A 129 182 - -
Vimu2g02226 415 CDD SANT 133 176 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu2g02226 Vimu-Chr2 17342977 17345563 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu2g02226 22 316 MYB Transcription Factor Family AT5G58850 42.216 3.26e-69 223
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vimu2g02226 Myb_DNA-bind_6 1.9e-20 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu2g02226 K09422 - gmx:100786295 438.343
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu2g02226 2 17342977 17345563 Vimu1g01635 1 15806267 15809915 PCT