Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu2g02224 ATGGCATCATCCATTGCCACCTTCTTCAACAAGTTCCTTTATCTTCTCATCCTCTTCGTCCACCTTGGCTGCTTCATCTTCACCACCACCGCCGGAGGAAAAAAACCGCCACCATCAAAGAAACGCAAAATCTCACCCTCATCCCAACCCTCCTCCCCTTCCCACCCAAAATTCAAAACCCACAAAGCCCTGTCCTCTTCTTGGCATTTCATCAAACACCTTCTTTCCACCAAGTCCTGCAAAACCCCCAAAACCGCCACCTCCCAACTATCCCCTCAATCAACCGCCGCCATCTCCACAACCTCCGTCTCCGCCGCAGCAGCACACTCCCTCGTTTCACTAACACAACCCGACCCGGAAAGAAAACCACCCGGGTCTTGTCCCGAATCCGACATTTCCGCCGACACCAACCTCTTCTTCCCTCTCCGCAACGACATCTTCCCCTGCACCGCGTGCGGCGAGATCTTCCAGAAACCCCACCTCTTGGAAACCCACCAAACCCTCAAACACGCGGTTTCGGACCTATCCGGATCCGACCCGGGTCACAACATCGTCCAGATCATCTTCAAATCGGGTTGGCCTGAATCTAAACCCGCCCCCACCATAACCCGCATCCTCAAGATCCACAACAGCCCAAAGATCCTCGCGAAGTTCGAGGAGTACCGGGAAGTCGTCAAGTCCAAAGCAGCGCGTCACGGAGCCCTCACGCGCCGCCGCGACGAGCGCTGCATCGCCGACGGGAACGAGCTCATGCGCTTCCACTGCTCCACGTTCCTGTGCGACTTGGGACACAGCGGGGATTCCTCAATTTGTTCTCAGCAATTTTGTAATATATGTGGAATTATTAAGTCGGGGTTTTCCCCGAAACTCGACGGAATTGCCACGCTGTCCACCAGCTGGCGTGCACACGTGGCTATACCAGACGACGTGGAACGAGAATTCCGTTTCATGAATGTCAAACGGGCCATGCTCGTTTGTAGGGTGATTGCGGGTCGGGTTGGATCCGACTCAGACGACCCCGAAAAAGCTGATGGTGGTTTTGATTCGGTAATGGCGAGGTCAGAGACTGGGGTTTACACGCGGCTTGACGAGGAGGAGTTGTTGGTGTTTAATCCTAGGGCTGTTCTTCCTTGCTTCGTGATTGTGTATACCGTGTGA 1158 0.544 MASSIATFFNKFLYLLILFVHLGCFIFTTTAGGKKPPPSKKRKISPSSQPSSPSHPKFKTHKALSSSWHFIKHLLSTKSCKTPKTATSQLSPQSTAAISTTSVSAAAAHSLVSLTQPDPERKPPGSCPESDISADTNLFFPLRNDIFPCTACGEIFQKPHLLETHQTLKHAVSDLSGSDPGHNIVQIIFKSGWPESKPAPTITRILKIHNSPKILAKFEEYREVVKSKAARHGALTRRRDERCIADGNELMRFHCSTFLCDLGHSGDSSICSQQFCNICGIIKSGFSPKLDGIATLSTSWRAHVAIPDDVEREFRFMNVKRAMLVCRVIAGRVGSDSDDPEKADGGFDSVMARSETGVYTRLDEEELLVFNPRAVLPCFVIVYTV 385
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu2g02224 385 ProSitePatterns Zinc finger C2H2 type domain signature. 149 170 IPR013087 -
Vimu2g02224 385 MobiDBLite consensus disorder prediction 42 59 - -
Vimu2g02224 385 ProSiteProfiles Zinc finger C2H2 type domain profile. 147 171 IPR013087 -
Vimu2g02224 385 PANTHER C2H2-LIKE ZINC FINGER PROTEIN 67 383 - -
Vimu2g02224 385 SUPERFAMILY ADP-ribosylation 174 384 - -
Vimu2g02224 385 Gene3D - 170 384 - -
Vimu2g02224 385 MobiDBLite consensus disorder prediction 31 59 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu2g02224 Vimu-Chr2 17328826 17331698 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu2g02224 68 385 C2H2 Transcription Factor Family AT2G29660 55.793 7.87e-111 327
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vimu2g02224 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu2g02224 - - var:108341815 703.745