Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu2g02222 ATGGTGCAAATGGATACACTCCCTCTCCTGTTAACCCTAGCTGCTGCTCTTTTATCCACATATTTTCTTTGGTTTTATTTCTTGGCTCGAACCCTAACCGGTCCAAAAGTGTGGCCAATGATTGGGAGCGTTCCCGAATTAGTGATGAACCGGAATAGGGTTCATGACTGGATCGCTTCAAACCTTCGCCAAACAGGAGGTTCCCCCACTTACCAAACATGCACTCTCAGTCTCCCTTTCTTTGCTCGCAAGCAGGGATTCTTTACCGTTACAAGCTGTCCTAGAAACATCGAACACATACTCCGAACCCGGTTCGACAACTACCCTAAAGGGCCGCACTGGCAGGCGGCGTTCCACGACCTCCTAGGGCAGGGAATTTTCAACAGCGACGGTGAAACGTGGCTCATGCAGCGGAAAACCGCCGCTCTCGAGTTCACGACCCGAACCCTAAGGCAAGCCATGGCTCGGTGGGTGAACCGGACTATAAAAAACAGGCTATGGTGTATTCTGGACAAAGCTGCTAAGGAAAACGTATCAGTGGATTTGCAGGACCTTCTTCTACGTTTAACCTTTGATAACATTTGTGGACTCACCTTTGGAAAAGACCCTGAAACTCTCTCACCGGATCTCCGTGAAAACCCCTTCACTGTTGCCTTTGACACTGCCACAGAAATCACCTTGCAAAGGCTTTTATATCCGGGCATAATATGGAGATTCGAGAAGCTTCTTGGCATCGGTAAAGAGAAGAAACTGGAGCAGAGTTTGAATGTCGTCGAAACTTACATGAACGATGCCGTTTCAGCTCGCGAGAAATCGCCTTCCGACGACTTGCTATCGAGGTTCATGAAGAAGCGCGACGCCGCGGGAAAGCCACTGAGCGCCGCCACGCTGCGTCAGATCGCGCTCAACTTCGTCCTGGCCGGCAGGGACACGTCATCAGTGGCGCTAAGCTGGTTCTTCTGGCTCGTCATGAACCACCCCACCGTGGAGGACAAGATCCTCGACGAACTTACGGCGGTGCTCACTTCCACTCGAGGTGGCGACCGGCGGAGGTGGACGGAGGAGGCGGTGGACTTCGAGGAGGCTGAGAGGCTGGTTTACTTGAAAGCCGCGCTGGCCGAAACGCTGCGTTTGTATCCGTCGGTGCCGGAGGATTTCAAGCACGCTGTGGCGGACGACGTGTTGCCGGATGGCACGGCGGTTCCAGCTGGTTCGACTGTGACGTATTCGATTTACGCGATGGGGAGAATGAAGAGTGTGTGGGGAGAGGACTGCATGGAGTTTAAACCGGAGCGGTTTTTATCAGTTAAAGGAGACCGGTTCGAACCGCCAAAAGACGGTTACAAGTTCGTTGCGTTTAACGCTGGACCGAGAACTTGCTTGGGCAAGGACTTGGCTTACCTGCAGATGAAATCTGTGGCTTCAGCTGTGCTTCTGCGTTACCGCCTGTCGCCGGTTCCCGGTCATCGTGTGCAGCAGAAGATGTCCCTGACTCTCTTCATGAAGAATGGACTTCGTGTGTTCCTGCAGCCACGTCAGCTTCGTCCACATACTGCCACGTCAGCATAG 1569 0.5303 MVQMDTLPLLLTLAAALLSTYFLWFYFLARTLTGPKVWPMIGSVPELVMNRNRVHDWIASNLRQTGGSPTYQTCTLSLPFFARKQGFFTVTSCPRNIEHILRTRFDNYPKGPHWQAAFHDLLGQGIFNSDGETWLMQRKTAALEFTTRTLRQAMARWVNRTIKNRLWCILDKAAKENVSVDLQDLLLRLTFDNICGLTFGKDPETLSPDLRENPFTVAFDTATEITLQRLLYPGIIWRFEKLLGIGKEKKLEQSLNVVETYMNDAVSAREKSPSDDLLSRFMKKRDAAGKPLSAATLRQIALNFVLAGRDTSSVALSWFFWLVMNHPTVEDKILDELTAVLTSTRGGDRRRWTEEAVDFEEAERLVYLKAALAETLRLYPSVPEDFKHAVADDVLPDGTAVPAGSTVTYSIYAMGRMKSVWGEDCMEFKPERFLSVKGDRFEPPKDGYKFVAFNAGPRTCLGKDLAYLQMKSVASAVLLRYRLSPVPGHRVQQKMSLTLFMKNGLRVFLQPRQLRPHTATSA 522
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu2g02222 522 CDD CYP86A 74 505 - -
Vimu2g02222 522 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 453 462 IPR017972 GO:0005506|GO:0016705
Vimu2g02222 522 Gene3D Cytochrome P450 28 521 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vimu2g02222 522 PRINTS P450 superfamily signature 370 381 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vimu2g02222 522 PRINTS P450 superfamily signature 460 471 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vimu2g02222 522 PRINTS P450 superfamily signature 451 460 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vimu2g02222 522 PRINTS P450 superfamily signature 307 324 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vimu2g02222 522 PRINTS E-class P450 group I signature 316 342 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vimu2g02222 522 PRINTS E-class P450 group I signature 460 483 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vimu2g02222 522 PRINTS E-class P450 group I signature 450 460 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vimu2g02222 522 PRINTS E-class P450 group I signature 296 313 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vimu2g02222 522 PRINTS E-class P450 group I signature 369 387 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vimu2g02222 522 FunFam Cytochrome P450 27 515 - -
Vimu2g02222 522 SUPERFAMILY Cytochrome P450 23 512 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vimu2g02222 522 Pfam Cytochrome P450 90 501 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vimu2g02222 522 PANTHER CYTOCHROME P450 24 506 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu2g02222 Vimu-Chr2 17283996 17286643 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu2g02222 4 512 Cytochrome P450 AT5G58860 75.490 0.0 806
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu2g02222 K15401 - gmx:100787559 938.332
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu2g02222 2 17283996 17286643 Vimu1g01636 1 15810736 15813020 PCT