Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu2g02213 ATGAAGTGGGAAATGGAGATCCTCCCTCCTGCCTCGCCTTACATGTACAACTCCAATTGGCTTTTGGATGATAACAGGACCAACACCAAATGGACCTCTGCAGAGAACAAGCTGTTTGAGAATGCTCTTGCAGTTTATGATAAGGACACCCCGGATCGGTGGCACAAGGTGGCTGAGATGATACCAGGAAAGACAGTTATGGATGTGGTGAAGCAGTACAAGGAATTGGAAGCAGATGTTTGTAACATAGAAGCTGGCTTGATCCCGATTCCAGGCTACAGTACCACCACCTCACCCTTCACCCTAGACTGGGTGAACACTCCTGGCTACGATGGCTTCAAAGGCCTCACTGCTAAGAGATCTTCCTCTGGCAGACCTCCTGAGCAGGAAAGGAAGAAAGGTGTGCCATGGACTGAAGAGGAACACAACCTTGACGAGGCAAGCTTTGTGGGTGGTTGGTTGTTTCTACTGGGGCTGAAGAAGTATGGCAAAGGTGATTGGAGAAACATTTCACGCAATTTTGTGATCACTCGAACGCCAACTCAAGTTGCCAGTCACGCGCAGAAGTACTTCATCAGGCAACTTTCAGGAGGCAAAGACAAGAGGAGGGCTAGCATCCATGACATAACAACAGTGAATCTCACAGAAACCACCAGAGCTTCTTCAGAAGACAGCAGCAAAAGATCCACTTCACCACAGCATTCTGTGATGCTCTCACACCAGCAGCAGCAGCAGCAGCAGCAGCAGCCAATTTCCAGTGCTGCCTCATCAGGAATGAATTTCCAATGGAGTAATCAGTCAAATGCAGGAATAGCCATGGCTCTCAATCCTGCACATGAACAAGTGTTTGTCTCCCCTTATGGCCTTAACTCATATGGGTTTAAGGTTCAGGGCCAAAGTCTGCACAGAAGTCCTCTCCATGAGTCTTCTTACCTAGGACCTCAGACACCAAACATGGTTTTCCAAATGCAGCAGCCCTCCCAGCACTATTCCCATGCATGA 1002 0.486 MKWEMEILPPASPYMYNSNWLLDDNRTNTKWTSAENKLFENALAVYDKDTPDRWHKVAEMIPGKTVMDVVKQYKELEADVCNIEAGLIPIPGYSTTTSPFTLDWVNTPGYDGFKGLTAKRSSSGRPPEQERKKGVPWTEEEHNLDEASFVGGWLFLLGLKKYGKGDWRNISRNFVITRTPTQVASHAQKYFIRQLSGGKDKRRASIHDITTVNLTETTRASSEDSSKRSTSPQHSVMLSHQQQQQQQQQPISSAASSGMNFQWSNQSNAGIAMALNPAHEQVFVSPYGLNSYGFKVQGQSLHRSPLHESSYLGPQTPNMVFQMQQPSQHYSHA 333
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu2g02213 333 NCBIfam myb-like DNA-binding domain, SHAQKYF class 132 194 IPR006447 GO:0003677
Vimu2g02213 333 CDD SANT 30 76 IPR001005 -
Vimu2g02213 333 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 129 195 IPR017930 -
Vimu2g02213 333 SUPERFAMILY Homeodomain-like 130 194 IPR009057 -
Vimu2g02213 333 MobiDBLite consensus disorder prediction 117 138 - -
Vimu2g02213 333 FunFam transcription factor MYB1R1 135 196 - -
Vimu2g02213 333 Pfam Myb-like DNA-binding domain 155 191 IPR001005 -
Vimu2g02213 333 Gene3D - 135 195 - -
Vimu2g02213 333 MobiDBLite consensus disorder prediction 202 259 - -
Vimu2g02213 333 MobiDBLite consensus disorder prediction 124 138 - -
Vimu2g02213 333 PANTHER DUPLICATED HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED 24 273 IPR043363 -
Vimu2g02213 333 MobiDBLite consensus disorder prediction 208 259 - -
Vimu2g02213 333 ProSiteProfiles Myb-like domain profile. 23 77 IPR001005 -
Vimu2g02213 333 CDD SANT 136 191 IPR001005 -
Vimu2g02213 333 Gene3D - 23 90 - -
Vimu2g02213 333 SMART sant 133 193 IPR001005 -
Vimu2g02213 333 SMART sant 27 79 IPR001005 -
Vimu2g02213 333 FunFam Transcription factor SRM1 23 90 - -
Vimu2g02213 333 ProSiteProfiles SANT domain profile. 26 76 IPR017884 -
Vimu2g02213 333 SUPERFAMILY Homeodomain-like 29 84 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu2g02213 Vimu-Chr2 17166537 17167884 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vimu2g02213 Myb_DNA-binding 1.2e-05 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu2g02213 - - gmx:100784163 555.829
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu2g02213 2 17166537 17167884 Vimu2g02213 2 17166537 17167884 ECH