Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu2g02203 ATGAAGAAAACACCAGTTCACAGTTCGCATCAATCTAATCAAAGAAAAAGGAATGTTGGTGTCCAAGATAGAGGTGCAGGGAATGACACACGGAAGCGCAGTGCTGAGAACCATTCTGTTCTGACATATTTCAATTCCGTCAAGAATTTTTTTTCGTTTTTTCTATCTGGGAAAAGAAAATTTTCCTCAGAAGCCCCTCAGAGTGATGACGGAAAGACCACACACAAAGTTGGAGGGGTATCGTGTAAGTTTCTTGAACAAAGATCTGTGCTTTCTTCTCTGCAATTTGGTTCTTCCGTATCGTCTGATAGTTCTAGGAGTTCATCAAAATATGTATTCTCTCAATCCTCTGCATCATCTGGCACTTCAAGTAGCCACCTTGGAGTTGGGAACTTCACCTTTGAGGAAATTTACAAGGCAACAGCAAAATTCTCTCCGGACAATAAGATTGGAGAAGGTGCGTTTGGAACAGTGTATAGGGGAAGGCTTTATGATGGATCCCTCGTGGCTGTGAAGCGTGCCAGGAAGGATTTGCAGAACAAGAACTTAGCTGAGTTCAAGAATGAAATAAACACCTTGTCAAATATTGAGCACAGGAGCCTTGTAAGATGGCGTGGGTATTTGGAGCATGGAGATGAAAAGATTCTTGTTGTTGAATATGTTAGTAATGGAACTCTTCGAGAACATTTAGATGGTTTTCGGGGGAATGGACTTGAAATTGGTGAGCGTCTGGACATAGCTATTGATGTAGCTCATGGAATTACTTACCTTCACATGTACACAGATCATCCAATTATACATAGGGACATCAAAGCATCAAATATCTTAATCACTGATAAACTAAGGGCCAAAGTAGCAGACTTTGGTTTTGCTCGGTTGGGTTCAGAAGACCCTGCTGCAACCCATATTTCAACTCAAATAAAAGGAACAGCTGGGTACATAGATCCTGATTACATGCGGACGCATCATCTATCTGAAAAGAGTGATGTCTATTCCTTTGGTGTGTTGCTGGTTGAAATGATGACAGGACGACATGCAGTTGAACCAAAGAGACCTCTTAGTGAGAGAGTTACAATTAAATGGGCAATGCAGTTGCTGAAACAAGGAGAAGTTGTGATTGCCATGGATCCAAGACTAAAGAGAAGTCCAGCATCAAACAAAGCAGTACAAAAGGTTCTGAAGCTAGCTTTCCAATGCCTTGCACCGGTGAGGCGATCACGGCCATCTATGAAGAGTTGTGCAGAGGTTCTGTGGGAAATCCGCAAAGATTTTACAGATAGAACATCTTCTCATACTCATAATGGTTCTCACCATTCTGCAAATTTCCCTCAAAGAGATGGGAGGAAGAATAGGCATAAGACATATGGTATTGAAGATGGTAAAGGCTATAAATTTGTATCAGCATAA 1407 0.4136 MKKTPVHSSHQSNQRKRNVGVQDRGAGNDTRKRSAENHSVLTYFNSVKNFFSFFLSGKRKFSSEAPQSDDGKTTHKVGGVSCKFLEQRSVLSSLQFGSSVSSDSSRSSSKYVFSQSSASSGTSSSHLGVGNFTFEEIYKATAKFSPDNKIGEGAFGTVYRGRLYDGSLVAVKRARKDLQNKNLAEFKNEINTLSNIEHRSLVRWRGYLEHGDEKILVVEYVSNGTLREHLDGFRGNGLEIGERLDIAIDVAHGITYLHMYTDHPIIHRDIKASNILITDKLRAKVADFGFARLGSEDPAATHISTQIKGTAGYIDPDYMRTHHLSEKSDVYSFGVLLVEMMTGRHAVEPKRPLSERVTIKWAMQLLKQGEVVIAMDPRLKRSPASNKAVQKVLKLAFQCLAPVRRSRPSMKSCAEVLWEIRKDFTDRTSSHTHNGSHHSANFPQRDGRKNRHKTYGIEDGKGYKFVSA 468
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu2g02203 468 SMART serkin_6 144 417 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu2g02203 468 ProSiteProfiles Protein kinase domain profile. 144 425 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu2g02203 468 Coils Coil 176 196 - -
Vimu2g02203 468 ProSitePatterns Protein kinases ATP-binding region signature. 150 176 IPR017441 GO:0005524
Vimu2g02203 468 MobiDBLite consensus disorder prediction 427 456 - -
Vimu2g02203 468 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 100 436 - -
Vimu2g02203 468 SUPERFAMILY Protein kinase-like (PK-like) 121 420 IPR011009 -
Vimu2g02203 468 FunFam Calmodulin-binding receptor-like cytoplasmic kinase 1 108 220 - -
Vimu2g02203 468 MobiDBLite consensus disorder prediction 1 34 - -
Vimu2g02203 468 Gene3D Phosphorylase Kinase; domain 1 104 220 - -
Vimu2g02203 468 ProSitePatterns Serine/Threonine protein kinases active-site signature. 265 277 IPR008271 GO:0004672|GO:0006468
Vimu2g02203 468 FunFam Calmodulin-binding receptor-like cytoplasmic kinase 3 221 431 - -
Vimu2g02203 468 Pfam Protein tyrosine and serine/threonine kinase 147 417 IPR001245 GO:0004672|GO:0006468
Vimu2g02203 468 Gene3D Transferase(Phosphotransferase) domain 1 221 442 - -
Vimu2g02203 468 MobiDBLite consensus disorder prediction 442 456 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu2g02203 Vimu-Chr2 17013677 17016409 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu2g02203 117 421 Receptor kinase-like Gene Family AT2G23450 43.831 1.09e-66 225
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-IV Vimu2g02203 PK_Tyr_Ser-Thr 4e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu2g02203 - - gmx:100815871 697.582