Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu2g02197 ATGGGAAAGTGTTCCTTCAAGGACTCTCTGAAGGCTCTGGAAGCTGATATTCAGTATGCTAATACTCTGGCATTGGACCATCCAAGGGAAAGAGATGGAGGATGCTTTCAGATGAGAATATCTTACAGTCCAGCAGCTCCTATTTTTCTATTTCTTGTTCAGTGGGCTGATTACCGCTTGGCTGGTGCTCTGGGTTTGCTCAGAGTTCTAATTTATGTGACTTATGGAAATGGGAATAATACCATGTCAATATATGAAAGGAAAGCAAGCATCAGACAATTTTACACTGTTATATTTCCTGCTCTGTTGCAACTTGAGAAAGGCATCACGGATTTGGAGGAAAGGAAACAGAAAGAAGTGGCTCTTAGGTACAAAGAAAAGAGTGGCTTCACAGAGGGAAAACTATCTGATATTGACATTGAAAGAGAAGAGGAATGTGGAGTCTGCTTGGAGGTGAAAGCCAAAGTTGTGTTGCCAGATTGCTGCCACCATATGTGTTTGCAGTGCTACAGAGATTGGTGTCAGAGATCTCAGTCTTGCCCCTTTTGCCGGAATAGCCTGAAGAGAATCGACTCCGGGGACCTTTGGATTTACACAGACATGAATGATGTTGTTGATATTGGGACAATTTCCAAAGAGAATTGCAAGAGGCTGTTTCTTTACATAGAGAAGTTGCCTTTAATTGTTCCAGATCCCAGATACGTGTTCTATGATCCATTTCTGAGATGA 729 0.4211 MGKCSFKDSLKALEADIQYANTLALDHPRERDGGCFQMRISYSPAAPIFLFLVQWADYRLAGALGLLRVLIYVTYGNGNNTMSIYERKASIRQFYTVIFPALLQLEKGITDLEERKQKEVALRYKEKSGFTEGKLSDIDIEREEECGVCLEVKAKVVLPDCCHHMCLQCYRDWCQRSQSCPFCRNSLKRIDSGDLWIYTDMNDVVDIGTISKENCKRLFLYIEKLPLIVPDPRYVFYDPFLR 242
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu2g02197 242 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 112 193 IPR013083 -
Vimu2g02197 242 FunFam RING/U-box superfamily protein 123 193 - -
Vimu2g02197 242 Pfam Ring finger domain 145 184 IPR001841 -
Vimu2g02197 242 ProSiteProfiles Zinc finger RING-type profile. 146 184 IPR001841 -
Vimu2g02197 242 PANTHER RING FINGER PROTEIN 41, 151 4 234 - -
Vimu2g02197 242 ProSitePatterns Zinc finger RING-type signature. 161 170 IPR017907 -
Vimu2g02197 242 SUPERFAMILY RING/U-box 134 190 - -
Vimu2g02197 242 SMART ring_2 146 183 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu2g02197 Vimu-Chr2 16918226 16920470 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu2g02197 111 187 C3H Transcription Factor Family AT5G41350 31.250 2.91e-07 48.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu2g02197 - K25840 gmx:100808567 427.943
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu2g02197 2 16918226 16920470 Vimu2g02197 2 16918226 16920470 ECH