Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu2g02196 ATGGGGGTTTCATGGGAAGAAAGTGTGACCTATTCCATCAACGCAATCTACCTTCTGTTCTCAGCGTACCTTGTCTTTGTCATGCAAATTGGCTTTGCCATGATATGTGCAGGTTCAGTGCGTGCAAAAAATGCAATGAACATAATGCTCACCAACGTCGTTGATGCAGTGGTTGGTAGCATCTCCTTCTACCTCTTCGGTTTTGCATTTGCATATGGCACTTCTAACCCTTTCATTGGCACTCATCTCTTTGCTCTATCCCACATTCCAAACGCAACTTACGACTATGCTTTCTTCCTTTACCAATGGGCTTTTGCTATAGCCGTAACAGGCATCACAAGTGGATCCATAGCTGAGAGAACTCAATTCAGTGCCTATCTTGTTTTCTCGTTTTTCCTCAGTGGCTTTGTCTACCCAGTTGTTGCTCATTGGCTCTGGTCATCCAGTGGTTGGCTCAGTCCAACTTCAACTCACTTGTTGTTGGGTTCAGGAGCCATTGACTTTGCTGGGAGTGGAGTGGTGCATTTGGTTGGTGCAGTTGCTGGTCTTTGGGGGTCCATCATAGAAGGCCCACGGGCCGGAAGATTTGATTCTTTAGGCAGGCCCATGCCTCTAAGAGGCCATAGTGCAACACTTGTTGTACTTGGAACCTTTTTGTTATGGTTTGGTTGGTTTGGATTTAATCCGGGATCCTTTGACAAGATCCTTGTGGCTTATCCTGGCACGTCGGACCAAGGTAATTGGACCTCGGTGGGTCGAACTGCCGTGACAACCATATTAGCTGGTTCGATGGCTGGGATAACTACCTTGTTTGGCCGACGGTTGTTAGTCGGTCATTGGGATGCAATGGATGTGTGCAACGGCTTGCTTGGTGGGTTTGTTGCCATCACGTCCGGATGCTCTGTTGTTGAGCCATGGGCCGCCATTATTTGCGGGTTTGTATCGGCTTGGGTTTTAATTGGGCTGAACATTGTAGCTCTAAAGTTGAACTATGATGATCCATTAGAGGCAGCCCAATTGCATGGAGGGTGTGGCACTTGGGGTTTGTTGTTTACTGGGTTGTTTGCGAAAGAGGAGTTTGTGATTCAAGTGTATAATTCTGGTGAGATTGGAGTTTCAAGACCCTATGGTGTACTACTTGGAGGTGGTTGGGGATTGTTTGGAGCCCAAGTGATTGAGATTTTGACAATCTTTGGATGGGTGAGTGTAACAATGGGCCCTATATTCTATGCCTTGCACAAGCTTGAGATATTGAGAATTCCTGTGAATGAGGAAGTTACTGGGCTTGACATTTCTTGTCATGGAGGGTATGCTTATGCTCAAGAAAACTATCATCTCAGACTTTATGGAGATTACATGCCTATTCAGCATGCTTTATCTTAG 1383 0.4606 MGVSWEESVTYSINAIYLLFSAYLVFVMQIGFAMICAGSVRAKNAMNIMLTNVVDAVVGSISFYLFGFAFAYGTSNPFIGTHLFALSHIPNATYDYAFFLYQWAFAIAVTGITSGSIAERTQFSAYLVFSFFLSGFVYPVVAHWLWSSSGWLSPTSTHLLLGSGAIDFAGSGVVHLVGAVAGLWGSIIEGPRAGRFDSLGRPMPLRGHSATLVVLGTFLLWFGWFGFNPGSFDKILVAYPGTSDQGNWTSVGRTAVTTILAGSMAGITTLFGRRLLVGHWDAMDVCNGLLGGFVAITSGCSVVEPWAAIICGFVSAWVLIGLNIVALKLNYDDPLEAAQLHGGCGTWGLLFTGLFAKEEFVIQVYNSGEIGVSRPYGVLLGGGWGLFGAQVIEILTIFGWVSVTMGPIFYALHKLEILRIPVNEEVTGLDISCHGGYAYAQENYHLRLYGDYMPIQHALS 460
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu2g02196 460 Gene3D Ammonium transporter AmtB like domains 4 451 IPR029020 -
Vimu2g02196 460 SUPERFAMILY Ammonium transporter 11 420 - -
Vimu2g02196 460 NCBIfam ammonium transporter 14 439 IPR001905 GO:0008519|GO:0016020|GO:0072488
Vimu2g02196 460 FunFam Ammonium transporter 2 448 - -
Vimu2g02196 460 Pfam Ammonium Transporter Family 17 439 IPR024041 GO:0008519|GO:0016020|GO:0072488
Vimu2g02196 460 ProSitePatterns Ammonium transporters signature. 167 192 IPR018047 GO:0008519|GO:0016020|GO:0072488
Vimu2g02196 460 PANTHER AMMONIUM TRANSPORTER 11 435 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu2g02196 Vimu-Chr2 16917824 16923570 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu2g02196 7 443 Inorganic Solute Cotransporters AT1G64780 65.991 0.0 594
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu2g02196 K03320 - pvy:116129597 771.541