Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu2g02193 ATGGCACACCACACCATGGAGGAGGACTTGAACATCTTGGAGATGAACACTGAGCATTGTAACAACAGCAATGCAACATGTGCAAAGACAGCACCACCACCACAGGAACAGAACAACCTCACATCTTCAACTTTGACAAAGAAGTGTTCATTTCTGGTCACCAAACTTCACTGCCAAAGGCTTAGGAGTTTCACAGCAAATTTGAAAGAGGTTGTTTTCGGCACTAAGCTTGCAGTGCTTTTTCCTGCTGTCCCTTTAGCTGTTTTTGCAGATTTTTATGGCCTTGGAAGGCCTTGGATTTTTGCTCTGAGCCTGCTTGGACTCACCCCTCTAGCTGAACGTGTCAGCTTCCTTACTGAGCAAATTGCGTATTACACTGGCCCCACAGTTGGAGGGCTTCTAAATGCAACCTGTGGTAATGCAACTGAGATGATCATATCTTTGCTAGCACTTCACCAAAACAAAGTAAATGTTGTGAAGCTCTCTCTACTGGGTTCCATTCTCTCAAACCTTCTATTAGTTCTTGGAAGTTCACTCCTTTGTGGAGGCTTAGCCAACCTAAGGAAGGAGCAAATATATGACAGGAAACAAGCAGATGTAAACTCACTGGTTTTGTTGCTGGGGTTGCTGTGCCATTTGCTGCCATTAATGTTCAGATATGCCTTAGCAGGAGAATATCATTCAATAGCCACTGGCACTCTACAATTATCCAGAGCAAGCAGCATTGTTATGCTTCTAGCATATGCCGGATACATCTTCTTTCAATTAAAAACACATAGACAATTTTTTGATGCGCAAGAGGAAGATGAAAACGAAGAAGAGAAGGCTGTGATAGGATTTTGGAGTGCATTTACTTGGTTGGTTGGTATGACACTTATCATATCTCTGCTTTCTGAATATGTTGTTGCAACCATTGAGGCTGCTTCAGATTCTTGGGGCATTTCTGTTAGCTTCATTAGCATAATTTTGTTACCAATTGTGGGAAACGCTGCAGAGCATGCCGGCTCAATCATTTTCGCTTTCAAGAACAAGTTGGACATATCATTAGGTGTTGCTATGGGATCTGCAACTCAAATTTCTATGTTTGTGATTCCATTAAGTGTGGTTGTTGCATGGATAATGGGTATAGAAATGGACTTGGATTTCAATCTCCTTGAAACTGGCTGCCTTGCTTTTACAATCATAGTTACAGCATTCACTTTGCAGGATGGAACTTCACACTACATGAAAGGAGTGATTCTTTTCCTGTGTTACATCATCATTGCTGCATGCTTTTTTGTTCTCAAAACTCCACTAATCAGTAAGTATAAATCTGTGTATTCCAATGCATGA 1332 0.4144 MAHHTMEEDLNILEMNTEHCNNSNATCAKTAPPPQEQNNLTSSTLTKKCSFLVTKLHCQRLRSFTANLKEVVFGTKLAVLFPAVPLAVFADFYGLGRPWIFALSLLGLTPLAERVSFLTEQIAYYTGPTVGGLLNATCGNATEMIISLLALHQNKVNVVKLSLLGSILSNLLLVLGSSLLCGGLANLRKEQIYDRKQADVNSLVLLLGLLCHLLPLMFRYALAGEYHSIATGTLQLSRASSIVMLLAYAGYIFFQLKTHRQFFDAQEEDENEEEKAVIGFWSAFTWLVGMTLIISLLSEYVVATIEAASDSWGISVSFISIILLPIVGNAAEHAGSIIFAFKNKLDISLGVAMGSATQISMFVIPLSVVVAWIMGIEMDLDFNLLETGCLAFTIIVTAFTLQDGTSHYMKGVILFLCYIIIAACFFVLKTPLISKYKSVYSNA 443
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu2g02193 443 PANTHER VACUOLAR CALCIUM ION TRANSPORTER 49 429 IPR004713 GO:0006812|GO:0008324|GO:0016020
Vimu2g02193 443 FunFam Vacuolar cation/proton exchanger 128 272 - -
Vimu2g02193 443 Gene3D - 128 277 IPR044880 -
Vimu2g02193 443 Gene3D - 278 427 IPR044880 -
Vimu2g02193 443 FunFam Vacuolar cation/proton exchanger 273 427 - -
Vimu2g02193 443 Pfam Sodium/calcium exchanger protein 99 256 IPR004837 GO:0016020|GO:0055085
Vimu2g02193 443 Pfam Sodium/calcium exchanger protein 283 424 IPR004837 GO:0016020|GO:0055085
Vimu2g02193 443 NCBIfam calcium/proton exchanger 63 426 - -
Vimu2g02193 443 NCBIfam calcium/proton exchanger 82 426 IPR004798 GO:0006816|GO:0015369
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu2g02193 Vimu-Chr2 16869956 16872735 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu2g02193 35 431 Antiporters AT2G38170 67.407 0.0 533
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu2g02193 K07300 - gmx:100778821 694.115
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu2g02193 2 16869956 16872735 Vimu2g02193 2 16869956 16872735 ECH
Vimu2g02193 2 16869956 16872735 Vimu1g01516 1 13601012 13604977 PCT