Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu2g02190 ATGGCGAAAACGACGTTGTTGTTGTTGCTCTGTACGCTGCTCCTCTTCGGAACCCTAGCTCTCACCCAGGCGAAGAAATCAAAGGAGGAATTGAAGGAAGTGACCAACAAGGTTTTCTTTGATGTTGAGATCGATGGAAAAGCTGCAGGTATACTCATAGCTAAAGCCGTAAAATTAGCCGGTTTAGGTCGTATTGTAATCGGTCTTTACGGGAAGGCAGTTCCAAAAACTGCAGAAAACTTCCGAGCTCTTTGCACAGGAGGTGATTTTACACATGGCAATGGAATGGGTGGAGAATCAATTTACGGAGAGAAGTTTGCTGATGAGAACTTCAAGTTAAAGCATACTGGACCAGGGATTCTGTCAATGGCAAACGCAGGTCCTGATACCAACGGTTCACAATTTTTCATCACAACTGTGACAACAAGCTGGTTGGACGGAAGGCATGTTGTTTTTGGTAAAGTTCTTTCTGGAATGGATGTTGTTTACAAGGTTGAAGCTGAAGGAAGGCAAAGTGGCACTCCCAAGAGCAAGGTTGTGATTGCTGACAGCGGTGAACTTCCTCTATAA 570 0.4456 MAKTTLLLLLCTLLLFGTLALTQAKKSKEELKEVTNKVFFDVEIDGKAAGILIAKAVKLAGLGRIVIGLYGKAVPKTAENFRALCTGGDFTHGNGMGGESIYGEKFADENFKLKHTGPGILSMANAGPDTNGSQFFITTVTTSWLDGRHVVFGKVLSGMDVVYKVEAEGRQSGTPKSKVVIADSGELPL 189
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu2g02190 189 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE 37 87 - -
Vimu2g02190 189 FunFam Peptidyl-prolyl cis-trans isomerase 84 187 - -
Vimu2g02190 189 Pfam Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 87 184 IPR002130 GO:0000413|GO:0003755
Vimu2g02190 189 ProSiteProfiles Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile. 62 186 IPR002130 GO:0000413|GO:0003755
Vimu2g02190 189 Gene3D - 88 188 IPR029000 -
Vimu2g02190 189 Gene3D - 23 87 IPR029000 -
Vimu2g02190 189 SUPERFAMILY Cyclophilin-like 60 187 IPR029000 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu2g02190 Vimu-Chr2 16837113 16839593 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu2g02190 63 166 U-box Gene Family AT5G67530 41.129 2.65e-20 85.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu2g02190 K01802 - gmx:100305485 282.337
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu2g02190 2 16837113 16839593 Vimu2g02190 2 16837113 16839593 ECH