Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu2g02186 ATGACACCACCTTTCACTCTCTCCCTCTCCCTCTTCGCCATTTTCTCTATAACCGCCGTGCACGGCCTCGGCTCCGCCGCCACCGTCGCCGTCACATACGGCACCGCCACCGTGTGTGGTATTGTCGCCGGGGAGCTCCACCACCGCATTCAGTGCTCCAGGGACGGAAGGCGCGTCCCTCTCACACTCCCCAACTCCTCCTTCGATGCCATCTCCGGCGGCAGGAACTTCTTCTGCGGCCTGCGCTCCGGCGGCCGGAGCCTCCACTGCTGGGACACTGCCGCCGCAGACGGTTCGCTCTGCCCCAAGAGAGTCTTCCACAGCGACGTGGTGCAGTTGGCCGACGTGGCAGTTGGTGATTCCCAGGTGTGCGCGAGGGAGGTGCAATCCGGTGTGGTGAGGTGCTGGAGAGGAAACAGGAGGGTCGAATTTTCTTCTCCCTCGCAGAGCTTAAGGTTTCGGAGTGTCACATGTGGTCGTGGTTTTTCATGTGGGATATTGAGAGAGAGCGGGAGGGTTGTGTGTTGGGGTGGTGGTGGTGGTGATGAGGGTGCATATATCAGTGGTGAGATTCAAAGAAAGTTTGAGAATTTTTCTATGTCGAGTTTGGTTGCTGGAGTGTCTCATGCATGTGGTTTGACTCTTCACGGGGCTTTGGTTTGTGGAGGGAACAATCGTTCAGGTCAACTTGGAAACAGTGTTCTTTTAAGTTCTTTGGATTTTTCGGCTCTTGCTTTGGGAGAGGGTTTCACGTGTGGTATTAGGCGGAGGAATGGGATTGTTGTCTGTTGGGGTGGTGGTTTTGATAGTGATGTGGTGAAGGGTGTTTCTTTTGAGTCACTTGTTGCTGGTTTGGATTATGTTTGTGGGTTGATGACTGGGAATTTGTCTGTTGTTTGTTGGGGTGGTAAGGGTGGGTTTGATGTGGCTAATGAGATTCCATTGGGAGAGATTCTCCCGGCTCCTTGTGTTGAGGGTGGATGTGGTAGCTCTTGTAGTACATATCCTGATTCTGATGCTCTTTGTCATGGGTCTGGGAGTATTTGTTATGATTGCCAAACTGAGGTTCCACTGGCTGTGCCATTGTTTCCACCACCATCATCACAGGTGCCTTCTTCACATGAAGGAAGAAACTTGAAGGAGTTTTTGGTGTTTCTTGTTGTTGGATCAGTTGGGGCTTTTGCGGGTCTATGTACTATTGTTTATTTCCTTTGGTTTGGTGCAAAGAAGGTTTTGGTGAGGAGAGAAGTAAGTAATAGTTCTGTGAAGCCTACAAGCTCAGAGAGTGATGCCTATGTGGATATAATCCCAATGCCTAATGTCGGTTCCAATGGAACAACCTTCAGAACCTTTTCTAGCAAAAGCCATGGGTCAAGAAGGTTGAGGAGGCATAGGAGTGGTTCATCATCGAAGCATGTGGACAGGACTGAGAGTTTCTCATTGCGTGAACTGGCTACAGCCACTGACAATTTCTCATTGTCTAATAAGATAGGTGCTGGTAGCTTCGGCAGTGTTTACAAAGGCATTCTAGGAGATGGTCGTGAAGTGGCCATTAAAAGAGGAGATACTAGTACTGTGAAGAAGAAATTTCAGGAGAAAGAAATTGCTTTTGATTCTGAATTGGCCATGCTGTCCCGGCTTCACCACAAGCATTTGGTGAGGCTAATTGGGTTCTGCGAGGAGAACGATGAGAGACTTTTGGTCTATGAGTACATGAGCAATGGCTCACTTTATGACCATTTGCACGACAAAAACAATAAAGAGAAGAGTAGCAGCATTTTAAATTCTTGGAAGATGAGGATCAAGGTTGCATTGGGTGCTGCTAGGGGAATTGAATACATTCATAACTATGCTGTGCCACCCATTATTCATAGGGATATAAAGTCATCAAACATACTTTTGGATTCAAACTGGAATGCAAGAGTATCTGATTTTGGATTGTCACTAATTTGGCCCGAGAGTGAGCAAGAATTGATGTCCACCAAGGCAGTTGGAACTGTTGGCTACATAGACCCTGAGTACTATGTGTTGAATGTGCTAACCACAAAGAGTGATGTGTATGGTTTAGGAGTGGTGATGCTGGAGCTTCTCACAGGAAAGAGAGCAGTGTTCAAAACTGAAGATGGCTCAAGCCCTATAGGGGTAGTGGAACACACAGGGCCAAAGATAGCATCAGGAGCGCTTTGGAGTGTGTTGGATTACAGAGTTGGACAGCCAGAAGTAAATGAGGTTGAGTCCCTTGAGATCATGGCTTACACTGCAATGCACTGTGTGAACATGGAGGGAAAAGAGAGACCAGAAATGACTGACATAGTTGCTAACTTGGAGAGGGCATTGGCTTTCATTGAAGGCAGCCCTACCAGCATTTCCCTTGCTTCCTTCTCAGCCCCTCTTGAATGA 2400 0.4817 MTPPFTLSLSLFAIFSITAVHGLGSAATVAVTYGTATVCGIVAGELHHRIQCSRDGRRVPLTLPNSSFDAISGGRNFFCGLRSGGRSLHCWDTAAADGSLCPKRVFHSDVVQLADVAVGDSQVCAREVQSGVVRCWRGNRRVEFSSPSQSLRFRSVTCGRGFSCGILRESGRVVCWGGGGGDEGAYISGEIQRKFENFSMSSLVAGVSHACGLTLHGALVCGGNNRSGQLGNSVLLSSLDFSALALGEGFTCGIRRRNGIVVCWGGGFDSDVVKGVSFESLVAGLDYVCGLMTGNLSVVCWGGKGGFDVANEIPLGEILPAPCVEGGCGSSCSTYPDSDALCHGSGSICYDCQTEVPLAVPLFPPPSSQVPSSHEGRNLKEFLVFLVVGSVGAFAGLCTIVYFLWFGAKKVLVRREVSNSSVKPTSSESDAYVDIIPMPNVGSNGTTFRTFSSKSHGSRRLRRHRSGSSSKHVDRTESFSLRELATATDNFSLSNKIGAGSFGSVYKGILGDGREVAIKRGDTSTVKKKFQEKEIAFDSELAMLSRLHHKHLVRLIGFCEENDERLLVYEYMSNGSLYDHLHDKNNKEKSSSILNSWKMRIKVALGAARGIEYIHNYAVPPIIHRDIKSSNILLDSNWNARVSDFGLSLIWPESEQELMSTKAVGTVGYIDPEYYVLNVLTTKSDVYGLGVVMLELLTGKRAVFKTEDGSSPIGVVEHTGPKIASGALWSVLDYRVGQPEVNEVESLEIMAYTAMHCVNMEGKERPEMTDIVANLERALAFIEGSPTSISLASFSAPLE 799
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu2g02186 799 MobiDBLite consensus disorder prediction 451 474 - -
Vimu2g02186 799 SUPERFAMILY Protein kinase-like (PK-like) 468 775 IPR011009 -
Vimu2g02186 799 Gene3D - 16 180 IPR009091 -
Vimu2g02186 799 Gene3D - 189 366 IPR009091 -
Vimu2g02186 799 Gene3D Phosphorylase Kinase; domain 1 452 571 - -
Vimu2g02186 799 ProSitePatterns Protein kinases ATP-binding region signature. 497 528 IPR017441 GO:0005524
Vimu2g02186 799 SMART serkin_6 491 782 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu2g02186 799 SUPERFAMILY RCC1/BLIP-II 24 266 IPR009091 -
Vimu2g02186 799 ProSitePatterns Serine/Threonine protein kinases active-site signature. 622 634 IPR008271 GO:0004672|GO:0006468
Vimu2g02186 799 FunFam Serine/threonine-protein kinase-like protein CCR4 572 790 - -
Vimu2g02186 799 ProSiteProfiles Protein kinase domain profile. 491 782 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu2g02186 799 CDD STKc_IRAK 497 777 - -
Vimu2g02186 799 MobiDBLite consensus disorder prediction 455 469 - -
Vimu2g02186 799 Pfam Protein kinase domain 493 711 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu2g02186 799 FunFam Somatic embryogenesis receptor kinase 1 462 571 - -
Vimu2g02186 799 Gene3D Transferase(Phosphotransferase) domain 1 572 783 - -
Vimu2g02186 799 PANTHER SERINE/THREONINE-PROTEIN KINASE-LIKE PROTEIN CCR4 200 785 IPR044815 GO:0004674
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu2g02186 Vimu-Chr2 16802011 16804687 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu2g02186 6 790 Receptor kinase-like Gene Family AT3G55950 50.613 0.0 704
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_CR4L Vimu2g02186 Pkinase 1.2e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu2g02186 - - gmx:100776682 1319.68