Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu2g02177 ATGTCCATCCACTATTCTCCGCCCTCTTTGCCCACCCTCCAATCCATCCGCCGCTCTCTCTCCGATATCTCTTCCCCGCCGCCAGACCACCGTCCCTTCGACACCCCCCGACGCTTCGCCGCCTTCGCCAACCGCCTCTCCCAACTCCTCCTCCCCCCACTTCCTCAATCTCCCCCTATCCACACCGCTCTCAAGGGACTCGCCGCCGAGCTCTCCAAGGCCGCCGAAACCCTCTCCGTCTACAACAACGGCAGCAAGATTCTCGTCCTCGTCCACTGCAAATCCCTATGCTCCTCCCTTCAAGATCGCGCTGTAGCCATTGCCGCCTGGCTCGCACTCCTCGCTTCCGCCCTCCCATCCGGCGACGGCGACGACGACTTCCGCAAGAAGGTCTCCGACCTCGCCAGAGACATGAAGCTCGCACAGTTCAGAGTCTCAGAGAACGAAGAGAGGGTTTGGTGCACCCTGGAAAAGGAAGGAGATGGGAGAGACAGCAGCAAAGCAGTGCAAAGTGGTATTGTCATGGATTTGGCTCGTGCTTTGGGGTTTGACCCTGGTGATCGGGCTGAGTTTTGTAACCAGGTGAAGCTCTTCAAAGGTGATCCTTTTAGATCCCATTCTGTACCTGAGAGAAGGGTGTTGGTGTCCTTGGAGAGAATTCTTAGTAACTGGTCTGTGGAGCCTGTCACTGTCACCCCCAATTGGGACTTTGAAATTGCTGAAGATGCTGCTGCTCCTGTTTTTCCATTTAAGAGTTTTCTCTGCCCCTTGACCAAGGAAGTCATGAGGGACCCTGTGGTTGTTCTGGAGTCTTCTCAGGCCTATGAGAGGGCTGCTATTGAGTACTGGTTTGAACGGTGCATTCAAGATGGCCGTGATCCCACTTGTCCGGTTACTGGCACGGTTCTTAAGTCCTTGGAGCTGAAACCTAATATTGGGTTGGCTGGGGTAATTGAAGAGTGGGTTGGCAGGGTTATCGATTATCAAATCAAATCTTCAGTGCAGTCTCTGAAAGAGGAACCCTTGTCTGTTGATCAAGTTGAGCGTGCTCTGGATCATGTTTATAAGGTTTCTGAAGAGCACCCCTCTAGCAGATACATAATCAGAAATGCTGGTGTTGTGCAGTTGATAGTAACACTGCTCAGTAATAACTCCAAAACTATTGGATCACGTTTGAGAAGCAAAGCTCTAACGACTTTACTTAGTATGGCCAAGGATGAAGAAAGCAGGGTCAGTTAG 1239 0.5214 MSIHYSPPSLPTLQSIRRSLSDISSPPPDHRPFDTPRRFAAFANRLSQLLLPPLPQSPPIHTALKGLAAELSKAAETLSVYNNGSKILVLVHCKSLCSSLQDRAVAIAAWLALLASALPSGDGDDDFRKKVSDLARDMKLAQFRVSENEERVWCTLEKEGDGRDSSKAVQSGIVMDLARALGFDPGDRAEFCNQVKLFKGDPFRSHSVPERRVLVSLERILSNWSVEPVTVTPNWDFEIAEDAAAPVFPFKSFLCPLTKEVMRDPVVVLESSQAYERAAIEYWFERCIQDGRDPTCPVTGTVLKSLELKPNIGLAGVIEEWVGRVIDYQIKSSVQSLKEEPLSVDQVERALDHVYKVSEEHPSSRYIIRNAGVVQLIVTLLSNNSKTIGSRLRSKALTTLLSMAKDEESRVS 412
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu2g02177 412 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 54 408 - -
Vimu2g02177 412 SUPERFAMILY RING/U-box 250 322 - -
Vimu2g02177 412 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 250 323 IPR013083 -
Vimu2g02177 412 ProSiteProfiles U-box domain profile. 248 328 IPR003613 GO:0004842|GO:0016567
Vimu2g02177 412 Pfam U-box domain 253 322 IPR003613 GO:0004842|GO:0016567
Vimu2g02177 412 CDD RING-Ubox_PUB 253 308 IPR045210 -
Vimu2g02177 412 Gene3D - 324 412 IPR011989 -
Vimu2g02177 412 SMART Ubox_2 252 321 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu2g02177 Vimu-Chr2 16611992 16619667 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu2g02177 250 410 U-box Gene Family AT1G20780 38.272 2.71e-25 106
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu2g02177 - - gmx:102659945 684.871
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu2g02177 2 16611992 16619667 Vimu2g02177 2 16611992 16619667 ECH