Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu2g02171 ATGGTAGTAATGAAAGGTCTTGATAATGGGAACAGAAAGCGCAAACGACAGCCTTCAAGAAAGCTTGGAGTGGATGCAAAAGTGGAGGTGCGGAGTATGGACAACGGGTTTCTAGGATCGTGGCACCCTGGGACAGTTATCATGTGTGAGGATTTGCAACGGCGTGTCAGATATAACAATATTTTGGATAACAAGGGGGTGTATAATCTTGAGGAGGTGGTGATTGTTTCAAAAGCTTTGGACGGTGATATTGAATGTGCAGACTTCTATGCACGCGGGTTCATTAGGCCACTGCCTCCTTTGGTTGAGTTTGATATGGGGGACCTTGTATATGGTTTATGTGTTGATGTGAACCATGAGGAAGCTTGGTGGGAAGGAGTTATCTTTGACTACTGTGATGGAATGGACAAGAGGAGTGTGTTTTTCCCTGATTTGGGTGATGAAATACCGGTTGAAATTCATCAGTTGCGGATTACCCAGGACTGGGATGAAATTACTGAGGAGTGGACCCGACGAGGGAACTGGGTGTTTCTTGATCTGCTGGAGGAGCAGAAGAGGAACTTGTTTATCACAGTTTCGGCCAAGCAGATTTGGTATGATATACGCCTTAGAAAGGAATTTGAGACGATTAGAGAGTGGACATGTAATTTGAAGTACTTGTGGGCCGAGTTGATAAAGGAGATAATTAATCACTACTTATCTCTAACGTTAAAGGAAATTATCTCTGTCCTAAACCTTCCTCGGAGTCTTTTAAATGAAACACCAGATCATGAATTTGCTGAAGCTATGCCTAATGTTGACTTAAGCATGAGCTGGCATAATAAGCAAACTGTTGTGCAGAAAGGAACTGTCCCTCGTATTAAAGGGACCTTATCTGACGTTCAAAATGAAATTAGACCCTGTGGTGATAGTCCTTTAGATGAAAGCAGAGAAGGTAGATCCTCAAGTCATTTAATGTCCTCTTTTTGGAGTCCTGTGAAGTTGTCTGGGGTTGAATTATGCCCTGATGCTGTTAGGGAATATCCACTTGCTTCCAAACGAGAAGTCAGGGCATTTTGGATGGACAAATTACAAAAGCATCTTTTATGTCTTGGATGGAAAATTGAATGGTCAAATAGATTAAATATTAAACGTTACAAGTATATTGTCCCCCCTTATACGAAGGGCCAAAGGTATTACCTTTCACTCATTGAAGTTTGTAAAGCTATGAAACATGACCCCAACATGAACTCCTTGCATCTCCAAAATGATCAGACCATAACGCATCCTATAGTTGATTTCCATCTTTCAGATGTGCCTTCTATTCCAGCTGAAAATATTCTGTCTATAACGCATCTCCAAAATGATCACACTAGAATGCATCCTACAGTTGATTGTCCTCTTTCAGATGTGCCTTCTATTCCAGCTGAAAATATTCAGTCTGTAACACATCTTCAAAATGATCACACTATAATGCATTCTACAGTTGATTGTCATCTTTCAGATGTGCCTTCTATTCCAGCTGAAAATATTCAGTCTATAACGCATCTCCAAAATGATCACACTATGATGCATCCTACAGTTGATTGTCATCTTTCAGATGTGCCATCTATTCCAGCTGAAAATGTTCAGTCTATAATGCATCTCCAAAATGATCACACTATAATGCATCCTACAGATGATTGTCATCTTTCAGACGTGCCTTCTATTCCAGCTGAAAATATTCAGTCTAAAACGCATCTCCAAAATGATCACACTATAATGCATCCTTCAGTTGATTGTCATCTTTCAGATGTGCCTTCTGTTCCAGCTGAAAATATTCAGTCTATAACGCATCTCCAAAATGATCACACTATAATTCATCTTACAGTTGATTGTCACCTTTCTGATGTGCCTTCTAATCCAGCTGAAAATATTCAGAATCTAGATATCATTCCTCCAGCTGAAAATATTCAGAATCTAGATATCATTCCTCCAGCTGAAAATATTCAGAATCTAGATATCTTTCCTCCTGCTGAAAATATTCAGAATCAAGATATCTTTCCTCCTGCTGAAAATATTCAGAATCAAGATATCTTTCCTCCTGCTGTGCCATCTTCTCCAGTTGAAGATGAAGTTGAAGAAGTACCTGAGTATTGTCCTCGGGCTGTTGTGCAGTATTATCGCATGTATATATACAAGAGGAGCCGGGCTGATAAAAAAAAGTGGATACTAAAGGCAAAGAAGCATCTATTAGCAGAGGGATGGGTTTTAGACCATCCACCTCCATTTAATAAGAAAAGGGGAATAATATACATGTCTCCACAAAATCGGAAATTCCCAACACTCCATGCAGCATGCAAATTTTGCATTGAGGAGACTATTCCTAATTGGGACCTTGAATGGCAGGAGATTGATGAAGGTGCTTCTGGTATTAAACCAACTACAAATCAAAAGAAGAAAAACAAGAGGGATTTGAAGGCCAACACACCCAAGGGCCAAACCTATGGACCTCGACAGGTGCTAAGATCAAATAAGAGGGTGCAAAAGGTGTCTGTCTCTACTCATTTACATCATCAGCCTCTAAACATTCCGTCTTATTTGATAGACAGCAACATCATCTTACCAAGGTCTAAGGTTTACTATAAGGCAAAAGGCACGAACCGTGCAGTCCGAACTTTGGCTGAGGGGAAAATAACTCATGATGGAATCAAGTGTAACTGTTGCCTTACAATATACAGTTTTGTTGGATTTGAAAAACATGCTACTGGCAGTAGTACCCGCAGACCCTCTGCTAATATCTTTTTGGATGATGGGAAGTCACTCTTGGACTGCCAGATACAAATGATGCAAGGTCAAAAGAATAGTGTAGCCAGTGGAAAAGCAATAAGTGATCTGTCTCTAGCTGATAATGACTACATTTGTTCAGTTTGTCGCTATGGTGGTGAACTTATTTTATGTGATAAATGTCCATCCTCATTCCATAAGACGTGTCTTGGTTTGGAGGATGTCCCTGAAGGTGACTGGTTTTGTCCATCATGTCGTTGCGGGATTTGTGGCCAAAGGAAAATTGATGGAAATGAGGTTGAACACTTCCTTTCTTGCATACAATGTGAACATAAATATCATGTTAGGTGCCTGAAAAATGGAGCTGCAAATACATCAAGATATAATGGAAACTGGTTCTGTGGAAAAGACTGTGAAAAGATATACGAGGGCCTTCATAAATTATTAGGAGAGCCAATTCCAGTGGCTAGCAATCTAACTTGGACTTTGGTGAAGTTTATCAACCCTGACAGTTGTGATCTTGGTAATGTTGAAAGTGACTTAGTGGCAGAAAGTTACTGCAAACTCAATCTTGCTCTTTCGTTGATGCATGAATGTTTTGAGCCCCTAAAAGAACCCTTGACTTCCAGAGATCTCGTGGAAGATGCTCTATTCAGCAGAAGGTCAGAGCTTAACCGAATAAATTTCCAGGGTTTCTACACTGTGCTACTTGAGAGAAATGAAGAACTGGTTAGTGTGGCAACTGTTAGGGTCCATGGGAAGAAGGTAGCTGAAATACCTCTTGTTGGTACCAGATTACAATATCGTCGACATGGAATGTGTCGCATTTTAGTAAATGAGCTTGAAAAGGTAATCCTCAAAACACACATTTGA 3618 0.4013 MVVMKGLDNGNRKRKRQPSRKLGVDAKVEVRSMDNGFLGSWHPGTVIMCEDLQRRVRYNNILDNKGVYNLEEVVIVSKALDGDIECADFYARGFIRPLPPLVEFDMGDLVYGLCVDVNHEEAWWEGVIFDYCDGMDKRSVFFPDLGDEIPVEIHQLRITQDWDEITEEWTRRGNWVFLDLLEEQKRNLFITVSAKQIWYDIRLRKEFETIREWTCNLKYLWAELIKEIINHYLSLTLKEIISVLNLPRSLLNETPDHEFAEAMPNVDLSMSWHNKQTVVQKGTVPRIKGTLSDVQNEIRPCGDSPLDESREGRSSSHLMSSFWSPVKLSGVELCPDAVREYPLASKREVRAFWMDKLQKHLLCLGWKIEWSNRLNIKRYKYIVPPYTKGQRYYLSLIEVCKAMKHDPNMNSLHLQNDQTITHPIVDFHLSDVPSIPAENILSITHLQNDHTRMHPTVDCPLSDVPSIPAENIQSVTHLQNDHTIMHSTVDCHLSDVPSIPAENIQSITHLQNDHTMMHPTVDCHLSDVPSIPAENVQSIMHLQNDHTIMHPTDDCHLSDVPSIPAENIQSKTHLQNDHTIMHPSVDCHLSDVPSVPAENIQSITHLQNDHTIIHLTVDCHLSDVPSNPAENIQNLDIIPPAENIQNLDIIPPAENIQNLDIFPPAENIQNQDIFPPAENIQNQDIFPPAVPSSPVEDEVEEVPEYCPRAVVQYYRMYIYKRSRADKKKWILKAKKHLLAEGWVLDHPPPFNKKRGIIYMSPQNRKFPTLHAACKFCIEETIPNWDLEWQEIDEGASGIKPTTNQKKKNKRDLKANTPKGQTYGPRQVLRSNKRVQKVSVSTHLHHQPLNIPSYLIDSNIILPRSKVYYKAKGTNRAVRTLAEGKITHDGIKCNCCLTIYSFVGFEKHATGSSTRRPSANIFLDDGKSLLDCQIQMMQGQKNSVASGKAISDLSLADNDYICSVCRYGGELILCDKCPSSFHKTCLGLEDVPEGDWFCPSCRCGICGQRKIDGNEVEHFLSCIQCEHKYHVRCLKNGAANTSRYNGNWFCGKDCEKIYEGLHKLLGEPIPVASNLTWTLVKFINPDSCDLGNVESDLVAESYCKLNLALSLMHECFEPLKEPLTSRDLVEDALFSRRSELNRINFQGFYTVLLERNEELVSVATVRVHGKKVAEIPLVGTRLQYRRHGMCRILVNELEKVILKTHI 1205
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu2g02171 1205 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 1107 1201 IPR016181 -
Vimu2g02171 1205 SMART agenet_At_2 107 164 IPR014002 -
Vimu2g02171 1205 MobiDBLite consensus disorder prediction 795 824 - -
Vimu2g02171 1205 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1002 1056 IPR013083 -
Vimu2g02171 1205 ProSiteProfiles Zinc finger PHD-type profile. 958 1003 IPR019787 -
Vimu2g02171 1205 SMART PHD_3 1002 1053 IPR001965 -
Vimu2g02171 1205 SMART PHD_3 960 1001 IPR001965 -
Vimu2g02171 1205 MobiDBLite consensus disorder prediction 1 21 - -
Vimu2g02171 1205 CDD PHD1_AIRE 961 1000 - -
Vimu2g02171 1205 CDD Tudor_Agenet_AtDUF_rpt1_3 24 100 - -
Vimu2g02171 1205 Pfam Tify domain binding domain 883 935 IPR032308 -
Vimu2g02171 1205 PANTHER PHD FINGER PROTEIN 12 702 1200 IPR042163 GO:0003714|GO:0045892
Vimu2g02171 1205 SMART ring_2 1002 1052 IPR001841 -
Vimu2g02171 1205 SMART ring_2 961 1000 IPR001841 -
Vimu2g02171 1205 Pfam Agenet domain 26 100 IPR008395 -
Vimu2g02171 1205 SUPERFAMILY FYVE/PHD zinc finger 947 1001 IPR011011 -
Vimu2g02171 1205 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 952 1001 IPR013083 -
Vimu2g02171 1205 Pfam PHD-finger 960 1002 IPR019787 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu2g02171 Vimu-Chr2 16521678 16527374 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu2g02171 31 439 PHD Transcription Factor Family AT5G58610 34.169 7.57e-61 224
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Vimu2g02171 Agenet 1.1e-12 CL0049
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu2g02171 - - vum:124829293 1532.31
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu2g02171 2 16521678 16527374 Vimu2g02171 2 16521678 16527374 ECH
Vimu2g02171 2 16521678 16527374 Vimu1g01490 1 13111835 13117408 PCT