Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu2g02170 ATGAAATTAGATGTGGAGAGGCTGGTTTTGCCGGCTGTTCCTAGTGTGCTAGAGACATGGACCGCCTCTTTTGGCTTTGCAAAGATGACTGATCATGAGAGATCTCAGTTTCTGGACTATACTTTCCTTGATTTTGAGGGTACCATTATGTGCCAAAAGTTGTTGATGAACATTGCATCTTCAGATTCAGTTCCGTTAATAGAGTCTGAACGTTGCTGTTTTAACCCCAGTAAGTCTGGTCCCATATATGAAGTGCACCAAGTAGAAGCTATTGACGAAAATGCTTGTGCTGGCAATAATGATCACCATGATTTAAGAGCTATTGACCCATTTAGAATGGTGAAGGAACCGGATCAACAGTGTGAGAAAGGAACAACCAGTAGTGTGTGCTCTTTTGATGAACTAGTTGAAAGGAATGATGATGATCTGTATAAGTTTGTCTACACACGAAAGAAAATGAGAAAATCATACCAAGGGATTTAG 483 0.4037 MKLDVERLVLPAVPSVLETWTASFGFAKMTDHERSQFLDYTFLDFEGTIMCQKLLMNIASSDSVPLIESERCCFNPSKSGPIYEVHQVEAIDENACAGNNDHHDLRAIDPFRMVKEPDQQCEKGTTSSVCSFDELVERNDDDLYKFVYTRKKMRKSYQGI 160
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu2g02170 160 PANTHER PHD FINGER PROTEIN 12 2 115 IPR042163 GO:0003714|GO:0045892
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu2g02170 Vimu-Chr2 16510277 16511262 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu2g02170 2 55 PHD Transcription Factor Family AT5G63900 50.000 6.47e-12 60.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu2g02170 - - vum:124829293 305.834