Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu2g02167 ATGATAACCGAAACAAAACTCAAACACAGTTTTCTTGAAGAACAGGAAGAAGAACAAGAATCTCCAGAGTGCCAACGTTGTTATCGCAATATGTCTTGTTTCGTAGCAGTTCCGAATTCCCCCGTGTTCTCTCTCTTCAACAACAACACCAACAACAATAACCCTTCTTCCATGGCAGAACCTCTCATGCTTTCTCTTCCCATTCCCTCGACCACACCCTCTTGCTCCTCTCCTCCTTCCTCTCCCCTGTTGAAGCGAAGAAGACCTGCAAAACTCGACATTCCCGTCGCTTCTCTCTCATTGACGCTCTCGACGGCGCCGGCGCCGTCTCCGGCGATGGACTCGGTCGTTGAGGTCGACGGAAGCGGGTTTTCTGTGTTCTGCAGACGAGGAAGGAGGGCCCACATGGAGGACCGTTACTCCGCTGCCGTTGATCTTCGCGGTGAACCCAAGCAGGCTTTCTTCGGCATATTCGATGGGCATGGAGGCACAAAAGCTTCGGAATTCGCTGCACATAACTTGGAGAAGAATGTGTTGGATGAGGTGGTTAGGAGAGATGAAAGTGACATTGAGGAGGCAGTGAAACATGGTTACCTCAACACAGATTCTGAATTCTTGAAGGAGGATCTTCATGGTGGCTCTTGCTGTGTGACAGCATTGATATGGAATGGCAACCTTGTTGTCTCTAACGTTGGGGATTGTCGTGCTGTGATTAGCAGAGGCGGGGTGGCAGAAGCCCTCACATCTGATCACAGGCCGTCAAGGGAAGATGAAAGGGACAGAATTGAAACTCAGGGTGGCTATGTTGATATGTGCCGTGGTGTGTGGAGGATCCAAGGGTCATTGGCTGTTTCAAGGGGAATTGGAGATAGGAACCTGAAACAATGGGTGATAGCAGAACCTGAGACCAAAGTTCTTAAAATTGAACCTCTGCATGACTTGTTGATCTTAGCTTCAGATGGCTTATGGGAAAAGGTTAGCAATCAGGAAGCAGTGGATATTGCTGGTCCTTTTTGTGACAGACAACAACCTTTGCAGGCTTGCAAGAAGCTCGTCGATTTATCTGTGTCGCGAGGTTCTGTGGATGATATAAGTGTCATGATCATCAAGTTGCAAAACTATGTTTGA 1128 0.484 MITETKLKHSFLEEQEEEQESPECQRCYRNMSCFVAVPNSPVFSLFNNNTNNNNPSSMAEPLMLSLPIPSTTPSCSSPPSSPLLKRRRPAKLDIPVASLSLTLSTAPAPSPAMDSVVEVDGSGFSVFCRRGRRAHMEDRYSAAVDLRGEPKQAFFGIFDGHGGTKASEFAAHNLEKNVLDEVVRRDESDIEEAVKHGYLNTDSEFLKEDLHGGSCCVTALIWNGNLVVSNVGDCRAVISRGGVAEALTSDHRPSREDERDRIETQGGYVDMCRGVWRIQGSLAVSRGIGDRNLKQWVIAEPETKVLKIEPLHDLLILASDGLWEKVSNQEAVDIAGPFCDRQQPLQACKKLVDLSVSRGSVDDISVMIIKLQNYV 375
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu2g02167 375 MobiDBLite consensus disorder prediction 1 21 - -
Vimu2g02167 375 MobiDBLite consensus disorder prediction 1 15 - -
Vimu2g02167 375 ProSitePatterns PPM-type phosphatase domain signature. 154 162 IPR000222 GO:0043169
Vimu2g02167 375 FunFam probable protein phosphatase 2C 25 116 374 - -
Vimu2g02167 375 SMART PP2C_4 113 369 IPR001932 -
Vimu2g02167 375 Gene3D - 117 375 IPR036457 -
Vimu2g02167 375 ProSiteProfiles PPM-type phosphatase domain profile. 123 371 IPR001932 -
Vimu2g02167 375 PANTHER PROTEIN PHOSPHATASE 2C 79 370 IPR015655 GO:0004722|GO:0006470
Vimu2g02167 375 CDD PP2Cc 123 371 IPR001932 -
Vimu2g02167 375 Pfam Protein phosphatase 2C 124 364 IPR001932 -
Vimu2g02167 375 SUPERFAMILY PP2C-like 123 373 IPR036457 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu2g02167 Vimu-Chr2 16393228 16396179 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu2g02167 31 371 PP2C-type Phosphatase Gene Family AT1G07160 58.245 5.55e-141 404
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu2g02167 K17506 - gmx:100813073 545.814
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu2g02167 2 16393228 16396179 Vimu2g02167 2 16393228 16396179 ECH
Vimu2g02167 2 16393228 16396179 Vimu1g01482 1 12899936 12901874 ECH
Vimu2g02167 2 16393228 16396179 Vimu1g01482 1 12899936 12901874 PCT