Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu2g02159 ATGTTTCAGAACATCTTCTCAGACAACAGTAACATCATGCTTGCAGCCATCATTTCCCTTCTCCTTGTCATCCTCTTTGTCCTCCTTCTACACCTCTATGCCAGATGGTTCCTTGCTCAGGCACAGGCTCAGGCACACGCCCGCCGTCGACGCCGCCGCCGCCGCCGAACGACGGTGACCGTCTCCGACGTCCTTGGCCCGGCTAGGTTCCACCAGTTCCACAGCTTCAACATAGAAGACTCCTCACCCCTCTCAACCAAAGGCCTGGATTCTTCCACCATTAGAGCAATTCCTCTCTTCATCTATGAGCATGACAACAGGGCCAAAGAAGATGAAGAACTTGAATGTGTGATTTGTTTGAGTGCCTTTGAGGGTGGTGAAGTGGGAAGGTGTTTGCCAAAGTGTGGCCATGGTTTTCATGTGGAGTGCATTGACATGTGGTTGAGTTCACACTCCAATTGTCCTATTTGTAGAGCCCCCATTGTAGTTGTGTCTTCAAGAGATCATGGTGCTGAATATGGTGGTTCTGATTTTGAGATTGTGGTTGATGCTGGCTCCGATGAGACTAGAGAGAGTGATCACGGGAATGGTAATGGTAATGGAGGAGCAAGAACAAGTGCTTCTGTGTCAGAAACTTCTTCCTCGTTTTTGGGGTGCTCTTTGGAGAGAATGCTTGGAAAGGTTTTCCCATCGGCTAATTAA 702 0.49 MFQNIFSDNSNIMLAAIISLLLVILFVLLLHLYARWFLAQAQAQAHARRRRRRRRRTTVTVSDVLGPARFHQFHSFNIEDSSPLSTKGLDSSTIRAIPLFIYEHDNRAKEDEELECVICLSAFEGGEVGRCLPKCGHGFHVECIDMWLSSHSNCPICRAPIVVVSSRDHGAEYGGSDFEIVVDAGSDETRESDHGNGNGNGGARTSASVSETSSSFLGCSLERMLGKVFPSAN 233
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu2g02159 233 MobiDBLite consensus disorder prediction 187 209 - -
Vimu2g02159 233 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 7 165 IPR044675 -
Vimu2g02159 233 FunFam RING-H2 finger protein ATL1 75 163 - -
Vimu2g02159 233 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 71 162 IPR013083 -
Vimu2g02159 233 Pfam Ring finger domain 115 158 IPR001841 -
Vimu2g02159 233 CDD RING-H2_EL5-like 115 158 - -
Vimu2g02159 233 MobiDBLite consensus disorder prediction 195 209 - -
Vimu2g02159 233 ProSiteProfiles Zinc finger RING-type profile. 116 158 IPR001841 -
Vimu2g02159 233 SMART ring_2 116 157 IPR001841 -
Vimu2g02159 233 SUPERFAMILY RING/U-box 106 164 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu2g02159 Vimu-Chr2 16289904 16290635 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu2g02159 4 187 Rapid Response to Elicitors AT3G16720 34.783 1.69e-30 113
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu2g02159 - - pvu:PHAVU_006G070000g 364.385
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu2g02159 2 16289904 16290635 Vimu2g02159 2 16289904 16290635 ECH
Vimu2g02159 2 16289904 16290635 Vimu1g01468 1 12671752 12674750 PCT