Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu2g02158 ATGGCCTCGCAACAACAACACTTAATTCAATTGCACATTGACGACAATGCTTCAACCTTTTTCCACTCTTATGGCCAAAGCTTCTTCTTATTGCTCCTGTTTTTCGCTCTTTTCATCTTTGTCCCTTCGCTGTTCTTGTGCATCCACTTCTGTCGCCGTTGTTTCTCACATCATGGAAGGTCCACAGCAACCACTGTGGTCTCTCCCCTTCCTGATCTTCAATGTGTTGGAATTGAGCTAACAAACAACATCACGGTACCGTCTTCAGCTAGCATAGTTGGTTTAGAGAAGGAAGAATGCTGCATATGTTTGAGTCTTTTCCAAGGTAATGAAAAGTTGAAGGTGTTGATTCAATGTGAACATGTCTTTCATTCTCAGTGCTTAGACTTATGGCTCACTGCACACTCTAGTTGCCCTCTCTGCAGGGCCTCTCTCCATCTCAGACAAAATCTCAACAAATAA 462 0.4307 MASQQQHLIQLHIDDNASTFFHSYGQSFFLLLLFFALFIFVPSLFLCIHFCRRCFSHHGRSTATTVVSPLPDLQCVGIELTNNITVPSSASIVGLEKEECCICLSLFQGNEKLKVLIQCEHVFHSQCLDLWLTAHSSCPLCRASLHLRQNLNK 153
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu2g02158 153 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 78 150 IPR013083 -
Vimu2g02158 153 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 28 145 IPR044675 -
Vimu2g02158 153 Pfam Ring finger domain 99 142 IPR001841 -
Vimu2g02158 153 ProSiteProfiles Zinc finger RING-type profile. 100 142 IPR001841 -
Vimu2g02158 153 SUPERFAMILY RING/U-box 86 148 - -
Vimu2g02158 153 SMART ring_2 100 141 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu2g02158 Vimu-Chr2 16280922 16281383 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu2g02158 30 149 Rapid Response to Elicitors AT2G35000 35.075 2.15e-16 73.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu2g02158 - - gmx:102667569 201.83