Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu2g02145 ATGATTCTGCAACCTATAGATAATTTGATGATCTACTTGTCCGGCTCCCGTTATTTGTACTTGCACTTTAAGTCTCTAGGGCACGGTTGGATCTCTCAAGCTGAAATTGTAATTAGGAAACATAGTGAGAACTACGCTTCCAGCATGAGGGCCTCTTCTTCTGTGGAGGGAAAGAATGAGTCTAATGGCCCCATAATGAAGGTGAGAGGTCTTCGGGAAGTAATGAGTCTGGCAATGGATCAGATGGAGGATCTACGTCTTCTGAAGATATTGTACGGACTGAGCAGGGGAGTTGAAGACTCAGATATTTGTGCATCTTCAAGGATATGTGAATATTCTATTAGATTTTCGATTTTTGAAGAAAGCATTCTGAAGATATTGTCTCGGAGAGACAAAGAGGAATTTAGGAGAATAGGTTGTGATTCTAACAGACCTTTGTTTATATTTATAAAGAAAGCACTCCGTAGTATTATTATTATCTTCGCTTTGTTATTGTTTTGCAGTTTGGAAAAAGATCTGCGATATATGGGAGAAACTGCAGAGAAGATTTGCCTTGCTTCTCTGAAAAACCCTGAGTTGGATCTCAAACTTGGCCTTTCTAACACTTATTCCGCAGGTAATTATGACCATGACAAAAATCTCATCATCAATGGCAGTTCTACAACTCCAGGTTCCAGCATCAATTTCAGCACAAACCAAACCTACCAAAGACAAACAAGTAAAATTGATCTCAAGGCGGCCAAACAAAAGGAGGATTCAAAAAGGCTAAAGAGGATGATGTCTAATCGAGTTTCTTCAGAGAAATATAGAAAGAAAAAGATGTTCTACATTGACCACTTGGAAAATGAGTTCAGAACTCTCCGGCAACAGATCTCCAACATTCGTTATCAAATTCAAAAGACTAAGAATGCTCATCACTCATTGCTCATCGAGCAGCATCAAGTGAAATTACAAATAGCAGCTTTTCAAAAAGACAGAATAATCAAAGAAGTTGAAATCGAAAAGAACATAGCAGAAGGGAATAGGCTGCGGAAGCTCCGAATGAATCAACTGATGAAGGCGACAGCAGATGCAAAGCGTAATTCGGATTGTGGTTTGCATGAACAACTCAATCTCAACCTCTAG 1125 0.392 MILQPIDNLMIYLSGSRYLYLHFKSLGHGWISQAEIVIRKHSENYASSMRASSSVEGKNESNGPIMKVRGLREVMSLAMDQMEDLRLLKILYGLSRGVEDSDICASSRICEYSIRFSIFEESILKILSRRDKEEFRRIGCDSNRPLFIFIKKALRSIIIIFALLLFCSLEKDLRYMGETAEKICLASLKNPELDLKLGLSNTYSAGNYDHDKNLIINGSSTTPGSSINFSTNQTYQRQTSKIDLKAAKQKEDSKRLKRMMSNRVSSEKYRKKKMFYIDHLENEFRTLRQQISNIRYQIQKTKNAHHSLLIEQHQVKLQIAAFQKDRIIKEVEIEKNIAEGNRLRKLRMNQLMKATADAKRNSDCGLHEQLNLNL 374
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu2g02145 374 SUPERFAMILY Leucine zipper domain 254 308 IPR046347 GO:0003700|GO:0006355
Vimu2g02145 374 Pfam bZIP transcription factor 252 309 IPR004827 GO:0003700|GO:0006355
Vimu2g02145 374 PANTHER BASIC LEUCINE ZIPPER 34 234 353 - -
Vimu2g02145 374 Coils Coil 277 297 - -
Vimu2g02145 374 Gene3D - 253 306 - -
Vimu2g02145 374 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 257 272 IPR004827 GO:0003700|GO:0006355
Vimu2g02145 374 SMART brlzneu 250 314 IPR004827 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu2g02145 Vimu-Chr2 16145208 16148675 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu2g02145 252 334 bZIP Transcription Factor Family AT5G07160 36.364 8.07e-07 46.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Vimu2g02145 bZIP_1 8.9e-09 CL0018
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu2g02145 - K25786 gmx:102664304 181.03