Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu2g02139 ATGGAAGAACGGTGGAGATTCATCACTTGGTTGAAGCTACTACGCGTGCTTCTGGCGGTGTTGTCTCTGCTATTCACCTTCACCATGGAACCTGTTCGCTGTTCCACTCTCAGCTCAGAAGGGTTGGCACTGCAAAAGATGAAGGAGAAAGAGGAGAGAGATCCATTGGGAAGTTTATGGAGTTGGAATAGAGAAGTGGTTGATCACTGCTCCCATGGCAAAGTTGTATCCTTGAAACTTCTCCAAGCAGCAAATGATGCTGATGATGAGAAGAAACCTCTTTCACCATCACCATCACCATCACCTTTTCCCTCCACACTATCACCACTTTCAGAGCCTTTCTCACCATCACAGAGCCCCTCAGATTCTCCAACATCTCCAGAATTATCCCCCTCACCATCTCCATCTCTCTCCTCTTTCTTTTTCTCTCTTTCACCCTCACCTTCGCCTGTGCCAGCACCAACTCCACACACATCACCTCCTCCAAATCCGCCTATGGTTGTGTCCACACCACCACACTCCAATTGGGTTTCAATGCCTTCTCCTGCTTCATCTTCAAACAGTTCAAGCACAAACCAACACGCTGTGATTATATGGTCCATAGTTGGGGGCTTCTCCTTCATTTTGGTGTCAGTCGTTGTTTTTCTTTGCTTCAGAAGTAACAAGGTTGTCACTGTAAAACCTTGGGCCACAGGGTTGAGTGGCCAGCTTCAGAAAGCCTTTTTAACCGGTGTTCCTAGTCTTAAGAAAACAGAACTTGAAGTAGCTTGTGAGTATTTCAGCAACATTATTGGTTCACTGCCTGATGGGACTGTTTATAAGGGGACTCTCTCCAGTGGAGTTGAGATAGCTGTAGTATCCTCTGCAGTGACTTCATCCCATCACTGGTCCAAAAATCTGGAAACTCAATTCCGAAAGAAGATAGCGATGTTGTCAAGAGTTAACCACAAAAATTTTGTGAATCTAATTGGATATTGTGAAGAGAATAAGCCATTCACAAGGATGATGGTTTTTGAGTATGCTCCAAATGGAACTCTATTTGAGCATCTACACATTCGAGAAGCAGAAAGGCTAGACTGGGGAATGAGAATAAGGATAGCTATGGGAATAGCTTATTGTCTGGAGCACATGCATCAGCTGACACCACCCATTGCCTATAAAAGCATACTATCTTCCTCTGTATATCTGACTGAAGATTATGCTGCTAAATTATCAGACTTTAGTTTTTGGACTGACATAGTCTCTACAAAAAAGGGTTCTGAAGCTGCACAGCTCTTAGAAACAGCTCCAGAATATATCAAGGCCAATGTTTACAGCTTTGGAGTACTATTGTTTGAATTGATTACAGGAAGAATTCCCTTTGCAGTGGAGAATGGCTTATTTGAAGATTGGGCAGCAGAATATATAAAGGGACAACCCTTGAGAGACGTGGTGGATTCAAACTTGAACTCTTTGCAAGAAAATGAAATCGATAAATGGGAAGAAGTGATTAACAGCTGTGTAGATCCTGATCCAGAAAAGAGACCAACTATGAGGGAGATCACTTCTAAGTTGAAGGAAATCACCACCATAGGACCTGATGGAGCAACTCCAAAAGCATCTCCTCTTTGGTGGGCTGAAATAGAAATTATGTCCACTGACTTAAGTTCAGACGTGAATCCATAA 1665 0.4318 MEERWRFITWLKLLRVLLAVLSLLFTFTMEPVRCSTLSSEGLALQKMKEKEERDPLGSLWSWNREVVDHCSHGKVVSLKLLQAANDADDEKKPLSPSPSPSPFPSTLSPLSEPFSPSQSPSDSPTSPELSPSPSPSLSSFFFSLSPSPSPVPAPTPHTSPPPNPPMVVSTPPHSNWVSMPSPASSSNSSSTNQHAVIIWSIVGGFSFILVSVVVFLCFRSNKVVTVKPWATGLSGQLQKAFLTGVPSLKKTELEVACEYFSNIIGSLPDGTVYKGTLSSGVEIAVVSSAVTSSHHWSKNLETQFRKKIAMLSRVNHKNFVNLIGYCEENKPFTRMMVFEYAPNGTLFEHLHIREAERLDWGMRIRIAMGIAYCLEHMHQLTPPIAYKSILSSSVYLTEDYAAKLSDFSFWTDIVSTKKGSEAAQLLETAPEYIKANVYSFGVLLFELITGRIPFAVENGLFEDWAAEYIKGQPLRDVVDSNLNSLQENEIDKWEEVINSCVDPDPEKRPTMREITSKLKEITTIGPDGATPKASPLWWAEIEIMSTDLSSDVNP 554
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu2g02139 554 MobiDBLite consensus disorder prediction 147 169 - -
Vimu2g02139 554 FunFam Inactive receptor-like serine/threonine-protein kinase 232 340 - -
Vimu2g02139 554 SUPERFAMILY Protein kinase-like (PK-like) 244 518 IPR011009 -
Vimu2g02139 554 ProSiteProfiles Protein kinase domain profile. 258 521 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu2g02139 554 PANTHER PROTEIN MALE DISCOVERER 2 118 546 - -
Vimu2g02139 554 MobiDBLite consensus disorder prediction 170 187 - -
Vimu2g02139 554 MobiDBLite consensus disorder prediction 132 146 - -
Vimu2g02139 554 Gene3D Transferase(Phosphotransferase) domain 1 341 526 - -
Vimu2g02139 554 Pfam Protein tyrosine and serine/threonine kinase 263 518 IPR001245 GO:0004672|GO:0006468
Vimu2g02139 554 MobiDBLite consensus disorder prediction 95 109 - -
Vimu2g02139 554 MobiDBLite consensus disorder prediction 86 187 - -
Vimu2g02139 554 Gene3D Phosphorylase Kinase; domain 1 233 340 - -
Vimu2g02139 554 MobiDBLite consensus disorder prediction 110 125 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu2g02139 Vimu-Chr2 16091270 16095054 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu2g02139 252 523 Receptor kinase-like Gene Family AT4G31110 34.130 1.36e-39 152
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VI-2 Vimu2g02139 PK_Tyr_Ser-Thr 7.4e-28 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu2g02139 - - var:108343001 733.791