Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu2g02120 ATGGGTGGTACCTCACCTTGTGCTTCTTGCAAGTTACTGAGACGTCGTTGCTCCAAGGAATGCATCTTTGCTCCTTATTTTCCTTCTGATGACCCACGCAAGTTTGCCATTGTACATAAGGTCTTTGGTGCTAGCAATGTCAGCAAAATGCTGCAGGAACTTGGTGTTGATCAAAGAGCAGATGCTGTGAGCAGTTTAGTTTATGAGGCAAATGCAAGAGTGAGAGATCCAGTGTATGGATGTGTAGGAGCGATATCATACCTACAAAACCAGGTTTCACAGTTGCAAATGCAACTTGCAGTGGCTCAAGCAGAGATTCTATGCATTCAGATGCAGCAAGAAGAAGCTACCATAACCACACAAGTAGACGACCAAGATCACAAATCACTGCTCCTTTCTGTAAACAATAACTATGAAACTCTTCCTCACTATCTTAACTTTCCTTCTTCTTCTTCCTCCTCTTCAAATGTCTTCCACCATGAGCCTCTCAAGAGAGAGTCTTTTTGGACTTGA 513 0.4308 MGGTSPCASCKLLRRRCSKECIFAPYFPSDDPRKFAIVHKVFGASNVSKMLQELGVDQRADAVSSLVYEANARVRDPVYGCVGAISYLQNQVSQLQMQLAVAQAEILCIQMQQEEATITTQVDDQDHKSLLLSVNNNYETLPHYLNFPSSSSSSSNVFHHEPLKRESFWT 170
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu2g02120 170 Coils Coil 85 105 - -
Vimu2g02120 170 Pfam Lateral organ boundaries (LOB) domain 6 103 IPR004883 -
Vimu2g02120 170 ProSiteProfiles LOB domain profile. 5 106 IPR004883 -
Vimu2g02120 170 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 4 137 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu2g02120 Vimu-Chr2 15898625 15899521 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu2g02120 3 170 AS2 family AT2G30130 65.789 2.79e-76 224
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Vimu2g02120 LOB 5.4e-42 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu2g02120 - - gmx:100819419 298.13
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu2g02120 2 15898625 15899521 Vimu2g02120 2 15898625 15899521 ECH
Vimu2g02120 2 15898625 15899521 Vimu1g01427 1 12147060 12147556 ECH
Vimu2g02120 2 15898625 15899521 Vimu1g01427 1 12147060 12147556 PCT