Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu2g02102 ATGACCACTTCTTTCTCTGACCTTCTCTCTTCTCCCACCGACCGGAACTCCGAAAAACCTCAAGAGTTGTCGGATCAAACAGGTTCTGCTGTGCCAAAATTCAAGTCCATACCACCTCCATCTCTCCCTATCTCTCATCCTCAAAATCATCCTCTTCCACCCATTTCTCCTTCTTACTTTAACATCCCTCATGGGTTAAGCCTCGCTGAACTTCTTGACTCTCCAGTTCTCCTTCACTCTTCCAACGTTTTGCCATCTCCGACCACTGGATCATACGGCGGTCAAGGCTTCAATTGGAAGAGCAGTTATGGAGAAAATCAGTACCATGTCAAAGAAGAAGACAAAAGCTTCTCAAGTTTCTCTTTCCAAACGCAAACACATATTCCTCTTACATCTTCAACTGGATTTCAATCTTCAAACGGGTGGAGTTTCCCGGAAACTGCTAAACAAGATGGATTCTCTTCAAGAATGAATATGAGTATGTTGAAAACTGAAGCCTCTTCAGCGATGCAGAGTTTCAACTCTGAGAATAATAACCACAACAGTGGTGGTCTTCAATCAGATTATAGCAGTTACCAGCCACAGGTTCAGACCTTAAGCAGAAGGTCAGATGATGGGTACAATTGGAGGAAATATGGGCAAAAACAAGTGAAAGGAAGTGAAAATCCAAGAAGCTACTACAAGTGCACATACCCCAGTTGTCCAACAAAGAAAAAGGTTGAGAGGTCCTTAGATGGACAAATTACTGAGATTGTTTACAAAGGTAGTCATAATCATCCCAAGCCTCAGGCTAACAAGAGGAACTCATTGTCTGCCTCATCACTTGCAATAAACAGCGTCAACAATGAAATAACACAAGCCCCTCATCACATGGATTCGGTTGCAACTCCAGAAAACTCATCCATATCAATGGAAGATGACGACTTTGGTCAGAGCAAATCAGGAGGAGATGAGTTTGATAACGATGAACCTGATGCCAAAAGATGGAGAATAGAAGGTGAAAATGAGGGTATATCAGCTGTTGGAAGTAGAACAGTGAGAGAACCCAGAGTTGTGGTTCAGACAACCAGTGACATCGATATTCTAGATGATGGATACAGATGGAGGAAATATGGGCAGAAAGTAGTAAAGGGAAATCCAAATCCAAGGAGTTACTACAAATGCACATTCACAGGATGTCCAGTGAGAAAGCACGTAGAGAGAGCTTCACATGACCTAAGGGCAGTGATCACAACCTATGAAGGAAAGCACAACCATGACGTGCCAGCAGCACGTGGCAGTGGCAGCAACTCTATCAGCAGAGCAGTGCCTATAAACGCTACCACAAACAGCACCACTAGTGCAGCAACTTCCATATACAGTAACAATTCTCACCAGAATCTTAGACCACCAGCACCAGAAAGGACACAACACTACAACCCCAATATGCAGCAGGTTTCAGGAAGTTTTGGATTCTCAGGGTTTGGGAATCCATTAATGGGGTCTTACATGAACCAACAATCTGACAATGTGTTCGCTTCTAGAGCCAAGGAGGAGCCAGGAGATGACTCGTTTCTTGACTCTTTGCTATGTTAA 1575 0.4362 MTTSFSDLLSSPTDRNSEKPQELSDQTGSAVPKFKSIPPPSLPISHPQNHPLPPISPSYFNIPHGLSLAELLDSPVLLHSSNVLPSPTTGSYGGQGFNWKSSYGENQYHVKEEDKSFSSFSFQTQTHIPLTSSTGFQSSNGWSFPETAKQDGFSSRMNMSMLKTEASSAMQSFNSENNNHNSGGLQSDYSSYQPQVQTLSRRSDDGYNWRKYGQKQVKGSENPRSYYKCTYPSCPTKKKVERSLDGQITEIVYKGSHNHPKPQANKRNSLSASSLAINSVNNEITQAPHHMDSVATPENSSISMEDDDFGQSKSGGDEFDNDEPDAKRWRIEGENEGISAVGSRTVREPRVVVQTTSDIDILDDGYRWRKYGQKVVKGNPNPRSYYKCTFTGCPVRKHVERASHDLRAVITTYEGKHNHDVPAARGSGSNSISRAVPINATTNSTTSAATSIYSNNSHQNLRPPAPERTQHYNPNMQQVSGSFGFSGFGNPLMGSYMNQQSDNVFASRAKEEPGDDSFLDSLLC 524
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu2g02102 524 Gene3D WRKY domain 189 263 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vimu2g02102 524 Pfam WRKY DNA -binding domain 204 260 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vimu2g02102 524 Pfam WRKY DNA -binding domain 363 419 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vimu2g02102 524 SUPERFAMILY WRKY DNA-binding domain 354 422 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vimu2g02102 524 MobiDBLite consensus disorder prediction 1 52 - -
Vimu2g02102 524 MobiDBLite consensus disorder prediction 165 203 - -
Vimu2g02102 524 SMART WRKY_cls 203 261 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vimu2g02102 524 SMART WRKY_cls 362 421 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vimu2g02102 524 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 72 454 IPR044810 GO:0003700
Vimu2g02102 524 MobiDBLite consensus disorder prediction 284 324 - -
Vimu2g02102 524 ProSiteProfiles WRKY domain profile. 357 422 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vimu2g02102 524 MobiDBLite consensus disorder prediction 1 31 - -
Vimu2g02102 524 FunFam WRKY transcription factor 33 349 415 - -
Vimu2g02102 524 SUPERFAMILY WRKY DNA-binding domain 202 262 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vimu2g02102 524 Gene3D WRKY domain 349 415 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vimu2g02102 524 MobiDBLite consensus disorder prediction 284 308 - -
Vimu2g02102 524 MobiDBLite consensus disorder prediction 310 324 - -
Vimu2g02102 524 MobiDBLite consensus disorder prediction 36 52 - -
Vimu2g02102 524 FunFam WRKY transcription factor 192 263 - -
Vimu2g02102 524 ProSiteProfiles WRKY domain profile. 204 262 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vimu2g02102 524 MobiDBLite consensus disorder prediction 165 207 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu2g02102 Vimu-Chr2 15726727 15729499 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu2g02102 1 523 WRKY Transcription Factor Family AT2G38470 44.405 9.05e-109 332
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Vimu2g02102 WRKY 3.4e-25 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu2g02102 K13424 - gmx:100127397 795.038
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu2g02102 2 15726727 15729499 Vimu2g02102 2 15726727 15729499 ECH
Vimu2g02102 2 15726727 15729499 Vimu1g01346 1 11062540 11065372 PCT