Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu2g02100 TTGTATGATATTTTCTACTTACAGTCAGGGGGTTTTGTGAGCTCAAATGGACGATTGTTAAGGCGTCTTGAAGTTTCTAGAGCTTTTGGAGATCACCAATTTAAAAAGGTAGGCCTTGTTGCAAGCCCGGATGTGTATATTTTTGAAGTTATAGATACTGAGCATTTCATCATTCTTGGTTGTGATGGCTTGTGGGGTTTTTGTTCTGAGATGAATATGGCACATTGTTTATGTCAGGTATTTGGTCCTAGTGATGTTGTTGATTTTGTTAAGAAGTTATTGGATGAGGGGCTACCTGTTTCCACCGTGTGCCGTCCTCTTGTAAGGGAGGTTGTCCGTAAGCGTTGCTGTAAAGATAACTGCACTGCCATTATTGTTGTATTTAAGCACAAATAA 396 0.3965 MYDIFYLQSGGFVSSNGRLLRRLEVSRAFGDHQFKKVGLVASPDVYIFEVIDTEHFIILGCDGLWGFCSEMNMAHCLCQVFGPSDVVDFVKKLLDEGLPVSTVCRPLVREVVRKRCCKDNCTAIIVVFKHK 131
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu2g02100 131 Gene3D - 6 129 IPR036457 -
Vimu2g02100 131 SUPERFAMILY PP2C-like 7 129 IPR036457 -
Vimu2g02100 131 Pfam Protein phosphatase 2C 8 115 IPR001932 -
Vimu2g02100 131 ProSiteProfiles PPM-type phosphatase domain profile. 1 128 IPR001932 -
Vimu2g02100 131 PANTHER PROTEIN PHOSPHATASE 2C 8 126 IPR015655 GO:0004722|GO:0006470
Vimu2g02100 131 CDD PP2Cc 8 128 IPR001932 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu2g02100 Vimu-Chr2 15712965 15713852 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu2g02100 8 65 PP2C-type Phosphatase Gene Family AT1G18030 65.517 1.28e-22 88.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu2g02100 K17500 - vra:106778509 174.866