Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu2g02096 ATGGAGACTGAAGTTGACTCAAGAGATACTTCACTCATTCTGCTCAAACAAGGAGCTGAAGCTAGGGTTTTTGAGTCTTCTTTTGTGGGAAGGAAATCCGTTGTCAAGGAACGCTTCTCAAAGAAGTACAGGCATCCAGCTTTGGATTCAAAATTGACCCTCAAGCGCTTAAATGCGGAGGCCAGGTGCATGACCAAAGCAAGGCGACTTGGTGTTTGTACTCCTGTGCTGTATGCTGTGGATCATGTGTTGCACACTTTAACATTTGAATATGTTACTGGCCCTTCAGTCAAAGATGTGTTCCTTGAAATCGGGTCACGTGGGACTGATAAAGAGTGGCTGGACAATATTGCATCCCAAATTGGTGAAGCAATTGGGAAGTTACATGATGGTGGTCTTATTCATGGCGATTTAACAACATCAAACATGTTGTTGAAGAGTGATACCAAGCAGTTGGTTCTTATTGATTTTGGTTTGAGCTTCACTTCAACTCTTCCAGAAGATAAAGCTGTTGATTTGTATGTTCTGGAAAGATCTCTTATCTCAATGCATTCATCATGTGGGAATGTGATGGATCAAATTCTTGCTGCATACAGGAAGTCGTCAAAACAGTGGTCATCGACGTTAAACAAGCTAGCACAAGTGCGACAAAGAGGGCGGAAGAGGACCATGGTTGGATGA 681 0.4288 METEVDSRDTSLILLKQGAEARVFESSFVGRKSVVKERFSKKYRHPALDSKLTLKRLNAEARCMTKARRLGVCTPVLYAVDHVLHTLTFEYVTGPSVKDVFLEIGSRGTDKEWLDNIASQIGEAIGKLHDGGLIHGDLTTSNMLLKSDTKQLVLIDFGLSFTSTLPEDKAVDLYVLERSLISMHSSCGNVMDQILAAYRKSSKQWSSTLNKLAQVRQRGRKRTMVG 226
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu2g02096 226 ProSiteProfiles Protein kinase domain profile. 9 226 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu2g02096 226 Gene3D Transferase(Phosphotransferase) domain 1 108 223 - -
Vimu2g02096 226 NCBIfam KEOPS complex kinase/ATPase Bud32 18 220 IPR022495 GO:0004674
Vimu2g02096 226 ProSitePatterns Tyrosine protein kinases specific active-site signature. 133 145 IPR008266 GO:0004672|GO:0006468
Vimu2g02096 226 PANTHER NON-SPECIFIC SERINE/THREONINE PROTEIN KINASE 6 226 IPR022495 GO:0004674
Vimu2g02096 226 SMART serkin_6 9 225 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu2g02096 226 FunFam Protein kinase superfamily protein 107 223 - -
Vimu2g02096 226 Pfam Protein kinase domain 41 162 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu2g02096 226 FunFam TP53-regulating kinase isoform X1 20 92 - -
Vimu2g02096 226 Gene3D Phosphorylase Kinase; domain 1 20 92 - -
Vimu2g02096 226 SUPERFAMILY Protein kinase-like (PK-like) 14 175 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu2g02096 Vimu-Chr2 15689951 15692873 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu2g02096 2 160 MAP Kinase Kinase Kinase AT5G66710 27.607 4.42e-07 48.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-4 Vimu2g02096 Pkinase 1.9e-11 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu2g02096 K08851 - gmx:100782376 409.838