Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu2g02089 ATGTCTTCTACTACTCTCCAATGGCTAAGCCTTGTTGGCACCATTTGGCTCCAAGCCATAATTGGGACAAACACTAATTTCCCTGCTTACTCTTCTCAGCTGAAACAACTTCTTTCCATTTCCCAAGTCCAACTGAATAACCTTGCTTTTGCCTCTGATGCAGGCAAGCTTTTTGGCTGGTTTTCTGGCCTTGCTTCTGTATACCTCCCCCTTTGGCTTGTCCTCTTGACAGGTTCAACTCTTGGCTTGATTGGCTATGGTGTGCAATATCTCTTCATAACCAAACAGATTTCCTCTTTGTCTTATTGGCATGTGTTCTTACTAACTTTTCTTGCTGGCAATAGTATTTGTTGGATCAACACTGTGTGCTATGTTGTCACCATAAGGAACTTCCTATCAGATCGCCAAGTTGCTGTCGGAATAACAACTAGCTACCAAGGACTGAGTGCAAAAATTTACGCCAACATTGTTGATGCTGTTTCTCCTCACAAGAAGGCAAGAGCATTTCTCTTCCTGAACTCTCTCTTGCCTGTGATAGTTGGCCTAGTAGCTGCTCCTCTGGTCAGAGAATTTGATGCCACAAGTCCTAAGCACACGCGTGTTGGGTTTGCCGTGATGTTTGTCATAACAATTTTCACTGGAATGTATGCTGTGTTAAGCAGCTTGCAATTTGTCACCAGCAAAGCATCCTCACTGGATATCATGACTGGTATCTTAGTGTCCCTTCTGTTGCCTCTTCTAGTCCCACTTTCAGTGAAGATCAAGGAACTACAGGATAATAGAGAAAATTTGAGAATTTACCATTTTACTATGGAGGAGAATAACAGTGAAGAGAGAGTGGAGAATGAGGTGAAAGAGGGTGAAGTTGAAGAAGAGATTGGTATTATAGAAGAAGTTGGAGTGAAGTTGATGCTTAGAAGAATAAATTTCTGGTTATATTTTTTTGTGTATTATTTTGGTGCAACAGTTGGTTTAGTATATCTTAATAACTTAGGACAGATTGCTGAATCTCGAGGTTGCTCCAATACTTCATCTTTGGTGTCTTTGTCATCATCCTTTGGGTTCTTTGGCCGTCTCATGCCATCTCTCATGTACTACTTCTACAGGGGACAGTGTAGAATTTCAAGACCTGCTTCACTGTTGGCAGTGATGATTCCAACATCAGGAGCATTTTTTTTGCTTCTCAACAGAACTGATCTTGCTCTTTACATTAGCACTGCAGTGATTGGAGTGTGTACGGGAGCAATCACTTCCATTGCTGTTTCCACAACCACTGAGCTGTTTGGTACAAAGCATTTTTCAGTGAACCATAATGTGGTGGTGGCCAACATTCCTATGGGATCCTTCGTATTTGGCTATTCAGCTGCACTTGTTTACCGTAATGAAGGACATGAACACTATGAGCATGGGCAATGCATGGGCATGGAATGCTACAGAAACACTTTTATCATCTGGGGTTCCTTGTGTTTCTTTGGAACTCTTTTGGCTTTGATTCTTCATGTTAGAACTCGCAAGTTTTACTCACAAAAACAATAG 1536 0.416 MSSTTLQWLSLVGTIWLQAIIGTNTNFPAYSSQLKQLLSISQVQLNNLAFASDAGKLFGWFSGLASVYLPLWLVLLTGSTLGLIGYGVQYLFITKQISSLSYWHVFLLTFLAGNSICWINTVCYVVTIRNFLSDRQVAVGITTSYQGLSAKIYANIVDAVSPHKKARAFLFLNSLLPVIVGLVAAPLVREFDATSPKHTRVGFAVMFVITIFTGMYAVLSSLQFVTSKASSLDIMTGILVSLLLPLLVPLSVKIKELQDNRENLRIYHFTMEENNSEERVENEVKEGEVEEEIGIIEEVGVKLMLRRINFWLYFFVYYFGATVGLVYLNNLGQIAESRGCSNTSSLVSLSSSFGFFGRLMPSLMYYFYRGQCRISRPASLLAVMIPTSGAFFLLLNRTDLALYISTAVIGVCTGAITSIAVSTTTELFGTKHFSVNHNVVVANIPMGSFVFGYSAALVYRNEGHEHYEHGQCMGMECYRNTFIIWGSLCFFGTLLALILHVRTRKFYSQKQ 511
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu2g02089 511 SUPERFAMILY MFS general substrate transporter 11 505 IPR036259 -
Vimu2g02089 511 CDD MFS_Mch1p_like 6 493 - -
Vimu2g02089 511 Pfam Nodulin-like 7 249 IPR010658 -
Vimu2g02089 511 PANTHER UNCHARACTERIZED NODULIN-LIKE PROTEIN 8 508 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu2g02089 Vimu-Chr2 15601261 15603112 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu2g02089 1 510 Nodulin-like Gene Family AT2G30300 49.520 2.11e-156 453
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu2g02089 - - gmx:100800763 835.869
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu2g02089 2 15601261 15603112 Vimu2g02089 2 15601261 15603112 ECH
Vimu2g02089 2 15601261 15603112 Vimu1g01316 1 10665094 10666799 PCT