Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu2g02088 ATGGCTACTCAAAACACACCCTTCGAACTTGTCATGAAAGATGTTGTTCTTATCAAACCATCAAAACCAACACCTTCCTCTATTCTTCCTTTATCTACACTAGACAATATACCTCTCCTTAATAACCTATGCCACACCCTTCATGTATTTCAATCCAAAACTCATGATCTTGATGAACCTGTTTGCCCTAATCACCAACTGCTAGATCCTGCTGATGTGATTAAAGCAGCAATTTCGAAGGCTTTATTCTATTATTATCCTCTAGCAGGTAGGATAGTAAAGCACACAGATGGAAACTTCCTGATCAACTGCAGTGCAGAAGGTGTTCCATTCTTGGAGGCCAGTGCTAGTTGCAATCTTTCTTCTCTCCATTGCTTGGAAGGCACTGACATGGAAAAGGCAAAACACTTAGTGTTTGACCTTCCTTCTCAAGATGAAAGTGGCTACCAATATCCCTTGGTGTTCAAGGTGACAACCTTTCCTTGTGGGGGTGTCACCATTGGAATGGGGGTGTCACATACTGTTGGTGATGGCGTTGGAGCATCTCAGATCTTCAAAGCCATCATGGAGCTTGCAAGGGGGGAAAGTGAGCCCACTGTGAAGCCTGTGTGGGAAAGAGAGAGGCTAAAGGGATCAATCACTAAACAGCCATTGCTAATTGATTCAGTGGATGAGGCCTCAGCTGCAGTTTCACCCTTTCTTCCAACCGAAATTCTCGTGCAGGAGCGCTTTAAGGTTAACAGTGAAAGCATCAGAAGACTGAAGATGAGTTTGATGAAGGAATCAGGTGAAAACGAAAACTTCACTACTTTTGAATCACTAGCTGCATATGTGTGGAGGTCTAAATCAAGGGCCTTAAAATTGAACTATGATGGGAAAGTTAAGCTAACTATCCCAGTTGGAGCAAGAAAGTACTTGCAGGATCTTTTGCCTGAAGGGTATTATGGAAATGCTATTGTTGATATTATCATTGCTTTAACAGTGAGGGAACTGAATGAAAGGCCACTGTATGAGATTGTGAAGCTCATAAAAGAAAGGAAGAAAGTTGCTTGTAACAGTGATTATGTCAGAAACTACATCAACACTTTAGAGACAGGAGTAACGAATTCCAACATTGAAGGGATTGGTGCATATACTGCGTTGACTGATTGGAGGTACTTGGGGATCTTGGAAAAGTTAGATTTTGGAGTTAAAGAACTTGTGAATACTTTTCCAGTCCCTTCTGACATGTTTGGATCCGTTGATTTATGCATTTTCTCATCTCTTTGCAACTTGGATTCTTCAATGGAGGGAGGGGTTAGTATTTTTCTGTCCCTACCACCTGCTGCATTGCCCAAGTTCAAGGAGGAGATGGAGGTTCTCAGCCTTTCGATTTGA 1377 0.4205 MATQNTPFELVMKDVVLIKPSKPTPSSILPLSTLDNIPLLNNLCHTLHVFQSKTHDLDEPVCPNHQLLDPADVIKAAISKALFYYYPLAGRIVKHTDGNFLINCSAEGVPFLEASASCNLSSLHCLEGTDMEKAKHLVFDLPSQDESGYQYPLVFKVTTFPCGGVTIGMGVSHTVGDGVGASQIFKAIMELARGESEPTVKPVWERERLKGSITKQPLLIDSVDEASAAVSPFLPTEILVQERFKVNSESIRRLKMSLMKESGENENFTTFESLAAYVWRSKSRALKLNYDGKVKLTIPVGARKYLQDLLPEGYYGNAIVDIIIALTVRELNERPLYEIVKLIKERKKVACNSDYVRNYINTLETGVTNSNIEGIGAYTALTDWRYLGILEKLDFGVKELVNTFPVPSDMFGSVDLCIFSSLCNLDSSMEGGVSIFLSLPPAALPKFKEEMEVLSLSI 458
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu2g02088 458 Gene3D - 235 451 IPR023213 -
Vimu2g02088 458 Gene3D - 7 219 IPR023213 -
Vimu2g02088 458 PANTHER ACYL TRANSFERASE 4 10 452 - -
Vimu2g02088 458 Pfam Transferase family 16 453 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu2g02088 Vimu-Chr2 15564621 15566289 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu2g02088 12 396 Monolignol Biosynthesis Gene Families AT5G48930 28.392 1.37e-32 126
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu2g02088 K20240 - gmx:100801843 496.893