Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu2g02080 ATGGGTCCGAACCTAGAATGTCGTATGTACGAGGCGAGGTACCCGGAGGTGGACATGGCGGTGATGATACAGGTGAAGAACATCGCGGACATGGGTGCCTACGTGTCACTTCTGGAGTACAACAACATCGAGGGTATGATCTTGTTCTCGGAGCTCTCCCGCCGTCGGATTCGGAGCGTCAGCAGCCTCATCAAGGTGGGGCGCATCGAGCCCGTCATGGTCCTCCGTGTCGACAAGGAAAAGGGTTACATCGATCTCAGCAAGCGTAGGGTCTCCGAAGAGGACATTCAGGCCTGCGAGGAGAGGTACAATAAGAGCAAGCTCGTCCACTCCATCATGCGCCACGTTGCTGAAACTCTCAACATCGATTTGGAGGAGCTCTATGTTCATATTGGATGGCCTTTATATCGCAAATATGGTCATGCTTTTGAGGCTTTCAAAATAATTGTCACCGATCCTGATTCTGTTTTGAATACGCTCACTCGTGAGATCAAGGAAGTTGGCCCTGATGGGCAAGAGGTGACTAAGGTAGTCCCAGCTGTGTCTGAAGAAGTAAAGGATTCTCTTGTAAAAAATATTAGAAGACGGATGACCCCCCAGCCCTTGAAAATTAGGGCTGATATTGAAATGAAATGTTTCCAATTTGATGGTGTTCTTCACATTAAGGAGGCAATGCGTAGAGCTGAAGCTGCTGGAAACGATGACTGCCCTGTCAAAATTAAACTGGTTGCTCCCCCACTTTATGTTCTTACTACTCAGACACTTGACAAGAACAGCATTGGGAGAGTTCAGGAAACTGAGTTTATTAATATCCCAACTGTTAGACACTATAACATGCACGAAGAAGAGCAAGGAATATTGGTTCTCAACAATGCCATTACTTCTTGCACTGAAGCAATAGAACAACACAAGGGTAAACTTGTGGTTAAGGAGGCAGCTAGAGCAGTGAGTGAACGTGATGATAAATTGCTTGCTGAGCACATGGCTAAGCTGCGCCAAGATAATGAGGAGGTCAGTGGAGATGAAGACAGTGAGGAGGAAGAAGATACAGGAATGGGCGAGGTTGATGTGGATAATGGTTCTGCGATAACAGAGTGA 1098 0.4699 MGPNLECRMYEARYPEVDMAVMIQVKNIADMGAYVSLLEYNNIEGMILFSELSRRRIRSVSSLIKVGRIEPVMVLRVDKEKGYIDLSKRRVSEEDIQACEERYNKSKLVHSIMRHVAETLNIDLEELYVHIGWPLYRKYGHAFEAFKIIVTDPDSVLNTLTREIKEVGPDGQEVTKVVPAVSEEVKDSLVKNIRRRMTPQPLKIRADIEMKCFQFDGVLHIKEAMRRAEAAGNDDCPVKIKLVAPPLYVLTTQTLDKNSIGRVQETEFINIPTVRHYNMHEEEQGILVLNNAITSCTEAIEQHKGKLVVKEAARAVSERDDKLLAEHMAKLRQDNEEVSGDEDSEEEEDTGMGEVDVDNGSAITE 365
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu2g02080 365 FunFam Eukaryotic translation initiation factor 2 subunit alpha 92 196 - -
Vimu2g02080 365 FunFam Eukaryotic translation initiation factor 2 subunit alpha 4 91 - -
Vimu2g02080 365 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2 SUBUNIT 1 1 355 IPR011488 GO:0003723|GO:0003743
Vimu2g02080 365 CDD S1_IF2_alpha 15 90 IPR044126 GO:0003723
Vimu2g02080 365 Gene3D Translation initiation factor 2; subunit 1; domain 2 92 173 IPR024054 -
Vimu2g02080 365 SUPERFAMILY eIF2alpha middle domain-like 91 196 IPR024054 -
Vimu2g02080 365 SUPERFAMILY Nucleic acid-binding proteins 8 89 IPR012340 -
Vimu2g02080 365 SMART S1_6 16 89 IPR022967 -
Vimu2g02080 365 MobiDBLite consensus disorder prediction 329 365 - -
Vimu2g02080 365 Coils Coil 328 348 - -
Vimu2g02080 365 Pfam Eukaryotic translation initiation factor 2 alpha subunit 127 257 IPR011488 GO:0003723|GO:0003743
Vimu2g02080 365 ProSiteProfiles S1 domain profile. 18 89 IPR003029 GO:0003676
Vimu2g02080 365 Pfam S1 RNA binding domain 15 89 IPR003029 GO:0003676
Vimu2g02080 365 Gene3D EIF_2_alpha 274 349 IPR024055 -
Vimu2g02080 365 Gene3D EIF_2_alpha 202 266 IPR024055 -
Vimu2g02080 365 Gene3D - 3 91 IPR012340 -
Vimu2g02080 365 MobiDBLite consensus disorder prediction 338 354 - -
Vimu2g02080 365 SUPERFAMILY eIF-2-alpha, C-terminal domain 200 341 IPR024055 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu2g02080 Vimu-Chr2 15469369 15471970 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu2g02080 2 365 Eukaryotic Initiation Factors Gene Family AT5G05470 76.164 0.0 531
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu2g02080 K03237 - gmx:100805950 606.675