Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu2g02078 ATGAGTTTGGGAGGTTCACTCTATTGGTACAAAGTGCCATTAGGAAGAAGGGACGCAAGAACTGCAAGCAAGGATGCTGCAAACTCAAACCTTCCTCCACCTTTTTTCAGCTTCCCCCAGCTTCTTGCAAATTTCCAAGCTCATGGACTTGACCTTAAAGATCTCGTAGCTCTTTCTGGTGCACACACCATTGGATTTGCACAATGCTCTACTTTTAGGAACAGGATTTACAATGACACCAACATAGACCCCACCTTTGCATCTTCCTTGCAGGGCACGTGCCCTAAAAGTGGTGGAGATAGCAATCTTTCACCGTTGGATCGTGTCACTCCCTCAAGAGTTGACACGTCATACTATAGTTCTTTGCTAAGTAAAAGGGGTCTTCTTCATTCTGATCAAGAGCTCTTCAAAGGAGATGGCAGTGAAAGTGACTCTTTGGTGAAGCTCTACAGCAGGAACCCTTTTGCTTTTGCAACAGATTTCAAAGCTTCCATGATCAAGATGGGTAACATGAAGCCTCTTACTGGGAATGCTGGAGAGATCAGAGTCAACTGTAGAAAAGTCAACTAA 570 0.4439 MSLGGSLYWYKVPLGRRDARTASKDAANSNLPPPFFSFPQLLANFQAHGLDLKDLVALSGAHTIGFAQCSTFRNRIYNDTNIDPTFASSLQGTCPKSGGDSNLSPLDRVTPSRVDTSYYSSLLSKRGLLHSDQELFKGDGSESDSLVKLYSRNPFAFATDFKASMIKMGNMKPLTGNAGEIRVNCRKVN 189
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu2g02078 189 SUPERFAMILY Heme-dependent peroxidases 8 189 IPR010255 GO:0004601|GO:0006979|GO:0020037
Vimu2g02078 189 Gene3D - 9 189 - -
Vimu2g02078 189 FunFam Peroxidase 32 168 - -
Vimu2g02078 189 PRINTS Plant peroxidase signature 105 120 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vimu2g02078 189 PRINTS Plant peroxidase signature 121 138 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vimu2g02078 189 PRINTS Plant peroxidase signature 53 65 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vimu2g02078 189 PRINTS Plant peroxidase signature 163 176 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vimu2g02078 189 PRINTS Plant peroxidase signature 6 21 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vimu2g02078 189 ProSiteProfiles Plant heme peroxidase family profile. 1 189 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vimu2g02078 189 ProSitePatterns Peroxidases proximal heme-ligand signature. 54 64 IPR019793 -
Vimu2g02078 189 PANTHER PEROXIDASE 72-RELATED 10 188 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vimu2g02078 189 PRINTS Haem peroxidase superfamily signature 54 69 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vimu2g02078 189 PRINTS Haem peroxidase superfamily signature 6 18 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vimu2g02078 189 PRINTS Haem peroxidase superfamily signature 107 122 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vimu2g02078 189 Pfam Peroxidase 4 152 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vimu2g02078 189 Gene3D Peroxidase, domain 2 32 168 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu2g02078 Vimu-Chr2 15460549 15461135 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu2g02078 1 189 Peroxidase AT5G05340 53.927 2.78e-67 207
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu2g02078 K00430 - gmx:100816580 333.954