Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu2g02072 ATGGCTGATGAAAATGGAAAGTGGCTCGTGTTTCCTTTGGGTGAGAAGGGTATTGGGACTGCACCCTATTTGATCCACTGTCCACCACAAACAGTTGTAAATGGTGATAAGACATTTTTGTTGATTAGACCAGCATTGTTAGAATCAAATTTCAGTGTTAGAGCAGGGGAGAAGGAGGGGGGTGGAGCTCTAGCATTGTTTGATTGTGTTATGGAGATATCATTGTTAAAAATGATATTAAATGGCATATCCTCGTTTTTGCATTTATCAATTTCTGGAAGCAAGAGCTCTGAACCTGTCTCAAAGTATTACCACAAGGCAGAGGAGATACTTAAGCTGTTGAAGCCAATCATTGATGAGATTGTTAATTCTGAGTTAGCTTCTGATGAAGTGCTTAATAAGATATTGGAAGAAATTGGTCTTGCTGTTAATGAATTAAAGGAGCATGTCGAGAACTGGCACCTATTGTCTAGCAAAGTATACTTTGTTTTGCAAGTTGAACCCTTGATATCAAGAATTCGCACTTCAGGGCTCAATATTTTCCAGCAGCTGAAGGTTTCTCAGCATTCTCTCCCTGTTGAATTGAGTTCTGAAGATTTACAGCAATGTTCACATAAACTTAAGCTTTTGGGGCATGAGGAAACCTCATCAGTTATTAAGGAAGCTATTGCAGCACAACTGGAATACGCAGGACCCAGTCCGGAGGTCCTGACAAAAATTGCTGATAGGCTGGACCTCGTGTCTAATCAGGATGTTCTTATTGAGGCTGTGGCCCTTGAAAGGTTGAAGGAAAATGCTGAACAATCTGAAAAGATTGATGAGGCGGAATATATTGATCAAATGATTGCTGTCATAACACGTATGCTTGAGCGTCTCGTTATGCTTAAGCAAGCTCAGAGTAGCAGCCCAGTTCCTATACCGGCTGATTTTTGTTGTCCACTTTCTTTGGAGTTGATGACTGATCCTGTGATTGTGGCATCAGGGCAAACATATGAGCGAGCTTTCATCAAGAATTGGATTGATCTTGGGCTAACTGTCTGTCCAAAGACACGTCAAACTCTGGCTCATACCAACCTAATACCTAATTATACTGTAAAAGCTCTAATTGCAAATTGGTGTGAATCTAACAATGTGCAACTAGTTGATCCCACAAAATCCCCAAATTTAAATCCACCATCCGTCCTTCATGGGTATATGGAATCCGGCACGACCAGGGAGTCACCTGTTTTTGCTCACCCCAGGAGCAACCAGCCGTCCTCACCTGAGTCAGCACGTTCTCGTTCTTTTAGTTCACCAGGTAATAACATAACTTCTGTTGGCATTCAGCTAGAGGAAACAGCATCACCTTTGCATCCCCGTTCAACTTCAGAAGGTTCCTTAAGTGGTATAATTAATGGACAATACATGGATCTTGCAAGAATATCTCCCGCTGGTTTGGATGACAGGTCTGCTAGCTCAGATGAAAGTACTGTGGATTCAGCTAGCCAACCATCAATGTCACCATCTAGAAGGGAATCATCCAGTGCCTTTAGCTCTGAACAATCTCAAACCCATATTAGAGCTGTTTCTGACTCCAGTGCACTTTCTACTGCAAACTTTCCACAAGAAACCCAAGATGATGACAACAATGCTCGGCTATCAATAAGTCCAGGCCACAGTAGAGATGCTTCTGGTGAATTAAATGCAGGGCCAGAAACTGCTGGTACTACTGTCATGCCATCAACACATAGAGAAGCTGAGTCCCCAGCCCGATTGTTAGAGACAAGGCGAAATCAAGGCATATGGAGGCGGCCACAAGAAAGGCTTGTTCCTAGGATAACATCGCCTGCTATTGAAACAAGAGCTGATCTTTCAGGTATTGAAGCCCAGGTTAGGAATTTGGTTGAGGGCCTGAGGAGCTCTGATCTTGATACTCAGAAAGAGGCAACAGCAGAACTCCGCCTTCTTGCAAAGCACAATATGGATAATAGAATTGCGATTGCAAACTGTGGAGCCATTAACTTATTAGTTGATTTACTTAGATCAGCTGATACAGCAATCCAAGAAAATGCTGTTACCGCACTTCTGAACTTATCAATCAATGATAACAACAAAACTGCAATTGCAAATGCTGGTGCAATTGAACCTCTGATTCACGTGCTTGAGACTGGGAGCCCAGAAGCCAAGGAGAATTCTGCTGCCACTCTTTTCAGCTTATCAGTGATTGAGGAAAACAAGATTTTCATAGGGAGGTCTGGGGCAATTGGACCACTGGTAGATTTATTGGGGAATGGAACCCCTAGGGGAAAGAAAGATGCTGCCACTGCTTTGTTTAATTTGTCAATATTTCATGAAAACAAGAATCGGATTGTGCAAGCTGGTGCTGTGAGGCACCTTGTGGAGTTAATGGACCCAGCAGCTGGAATGGTTGACAAGGCAGTTGCTGTCTTAGCAAATCTTGCCACAATTCAAGAAGGAAGAAACGCAATTGGTGAAGAAGGTGGGATTCCTGTGCTGGTTGAGGTTGTTGAGTTGGGTTCTGCGAGAGGAAAGGAGAATGCAGCCGCAGCTCTTCTACATCTTTGTTTACATAGTAACAAATTTTTAGGCAAGGTGCTTCAACAAGGAGCTGTCCCTCCTTTAGTAGCTTTATCTCAGTCAGGCACCCCAAGAGCCAAAGAAAAGGCCCAGGCTCTCCTCAATCAATTTAGAAGTCAAAGACATGGGAATGCTGGGAGGGGCTGA 2724 0.4328 MADENGKWLVFPLGEKGIGTAPYLIHCPPQTVVNGDKTFLLIRPALLESNFSVRAGEKEGGGALALFDCVMEISLLKMILNGISSFLHLSISGSKSSEPVSKYYHKAEEILKLLKPIIDEIVNSELASDEVLNKILEEIGLAVNELKEHVENWHLLSSKVYFVLQVEPLISRIRTSGLNIFQQLKVSQHSLPVELSSEDLQQCSHKLKLLGHEETSSVIKEAIAAQLEYAGPSPEVLTKIADRLDLVSNQDVLIEAVALERLKENAEQSEKIDEAEYIDQMIAVITRMLERLVMLKQAQSSSPVPIPADFCCPLSLELMTDPVIVASGQTYERAFIKNWIDLGLTVCPKTRQTLAHTNLIPNYTVKALIANWCESNNVQLVDPTKSPNLNPPSVLHGYMESGTTRESPVFAHPRSNQPSSPESARSRSFSSPGNNITSVGIQLEETASPLHPRSTSEGSLSGIINGQYMDLARISPAGLDDRSASSDESTVDSASQPSMSPSRRESSSAFSSEQSQTHIRAVSDSSALSTANFPQETQDDDNNARLSISPGHSRDASGELNAGPETAGTTVMPSTHREAESPARLLETRRNQGIWRRPQERLVPRITSPAIETRADLSGIEAQVRNLVEGLRSSDLDTQKEATAELRLLAKHNMDNRIAIANCGAINLLVDLLRSADTAIQENAVTALLNLSINDNNKTAIANAGAIEPLIHVLETGSPEAKENSAATLFSLSVIEENKIFIGRSGAIGPLVDLLGNGTPRGKKDAATALFNLSIFHENKNRIVQAGAVRHLVELMDPAAGMVDKAVAVLANLATIQEGRNAIGEEGGIPVLVEVVELGSARGKENAAAALLHLCLHSNKFLGKVLQQGAVPPLVALSQSGTPRAKEKAQALLNQFRSQRHGNAGRG 907
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu2g02072 907 MobiDBLite consensus disorder prediction 408 437 - -
Vimu2g02072 907 SMART Ubox_2 309 372 IPR003613 GO:0004842|GO:0016567
Vimu2g02072 907 SUPERFAMILY RING/U-box 296 383 - -
Vimu2g02072 907 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 284 383 IPR013083 -
Vimu2g02072 907 SUPERFAMILY ARM repeat 624 896 IPR016024 -
Vimu2g02072 907 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 787 828 IPR000225 GO:0005515
Vimu2g02072 907 CDD RING-Ubox_PUB 307 359 IPR045210 -
Vimu2g02072 907 MobiDBLite consensus disorder prediction 381 437 - -
Vimu2g02072 907 FunFam RING-type E3 ubiquitin transferase 607 902 - -
Vimu2g02072 907 Coils Coil 907 907 - -
Vimu2g02072 907 Pfam Armadillo/beta-catenin-like repeat 694 733 IPR000225 GO:0005515
Vimu2g02072 907 Pfam Armadillo/beta-catenin-like repeat 655 692 IPR000225 GO:0005515
Vimu2g02072 907 Pfam Armadillo/beta-catenin-like repeat 737 774 IPR000225 GO:0005515
Vimu2g02072 907 PANTHER U BOX DOMAIN-CONTAINING 99 896 - -
Vimu2g02072 907 ProSiteProfiles U-box domain profile. 305 379 IPR003613 GO:0004842|GO:0016567
Vimu2g02072 907 FunFam RING-type E3 ubiquitin transferase 305 380 - -
Vimu2g02072 907 MobiDBLite consensus disorder prediction 482 550 - -
Vimu2g02072 907 MobiDBLite consensus disorder prediction 478 591 - -
Vimu2g02072 907 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 746 788 IPR000225 GO:0005515
Vimu2g02072 907 SMART arm_5 607 651 IPR000225 GO:0005515
Vimu2g02072 907 SMART arm_5 735 775 IPR000225 GO:0005515
Vimu2g02072 907 SMART arm_5 776 815 IPR000225 GO:0005515
Vimu2g02072 907 SMART arm_5 653 693 IPR000225 GO:0005515
Vimu2g02072 907 SMART arm_5 816 856 IPR000225 GO:0005515
Vimu2g02072 907 SMART arm_5 694 734 IPR000225 GO:0005515
Vimu2g02072 907 Coils Coil 249 269 - -
Vimu2g02072 907 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 664 706 IPR000225 GO:0005515
Vimu2g02072 907 Pfam U-box domain 306 376 IPR003613 GO:0004842|GO:0016567
Vimu2g02072 907 Gene3D - 604 902 IPR011989 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu2g02072 Vimu-Chr2 15423237 15429209 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu2g02072 266 907 U-box Gene Family AT2G23140 62.615 0.0 728
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu2g02072 - - gmx:100811250 1352.42
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu2g02072 2 15423237 15429209 Vimu1g01299 1 10454706 10457846 PCT