Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu2g02070 ATGGAGAGTAAACAAAATATCTTAATGCAAAGATATGAGTTAGGAAGATTACTCGGCCAGGGAACCTTTGGAAAGGTTTACTATGGTAGAAGTGCAATAACTAACCAGAGTGTGGCTATTAAAATCAGGCGTGAAATATCTGTTATGAGATTGGCTAGACACCCTAATATTATTCAGCTGTTTGAGGTTATGGCTAACAAGAGTAAGATTTACTTTGTTATGGAGTATGCCAAAGGTGGTGAGCTCTTCAATAAGGTGGCCAAAGGAAAACTGAAGGAAGATGTGGCACACAAGTATTTTAAGCAGCTAATTAATGCTGTGGATTATTGTCACAGTAGAGGTGTGTTTCACAGAGATATAAAGCCTGAGAACATTCTATTGGATGAAAATGGAAATCTAAAGGTCTCTGATTTCGGATTAAGTGCTCTTGTTGAATCAAAGAGGCAAGATGGTTTACTACATACCCCTTGTGGCACACCTGCTTATGTTGCTCCTGAAGTCATCAAAAGGAAGGGATATGATGGCACAAAAGCTGATATATGGTCTTATGACCCTAATTTGATAGAGATGTATAGGAAGATAAGCAAAGCAGAATTAAAATGCCCTAATTGGTTCCCACCTGATGTATGCAAGCTATTGGGCATGATGTTGGATCCAAATCCTGACACTAGGATTCCCATATCTATCATTAGGGAACATTGTTGGTTTAAGAAAGAACCTAACGTTAAAAACAAAAGACCTGTAGTGGAAAACAATACTGTCTCTTCTTCAGGTACTGTTCTTCCTGATCAAAATGATTGCTGTGATGGTTTAGCAGCACAAGCAAACGGAGAGTCAGTTGCTCCCTTAAGTATAAATGCCTTTGATATTATCTCCCGTTCGGCGGGTTTTGATCTATCTAGATTCTTTGATGACAGTTTCCGGAAAAAGGAAGCAAGATTTAGTTCAAGGTTACCTGCAAATGTCATCATCTCCAAGCTGGAAGACATTGCTAAGCAACTGAGGATGAAAATAAAGAAAAAGGCTGCGGGTTTGATGAAATTAGAGGGCTTGGAGGAAGGTAGGAAGGGGGTTTTAACCATTGATGCAGAGATCTTTGAAGTTACACCTTGTTTCCATTTGGTGGAGGTTAAAAAATCAAATGGAGACACATTGGAGTATCAGAAAATATTGAAAGAGGATATCAGGCCTGCTCTTCAGGACATTGTTTGGGTCTGGCAAAGTGACCAACAACTGCAATCACAACCGTCAGAGCAAGAACTGCAACAGACAGATAATCAGCAGCAACAATAA 1293 0.3944 MESKQNILMQRYELGRLLGQGTFGKVYYGRSAITNQSVAIKIRREISVMRLARHPNIIQLFEVMANKSKIYFVMEYAKGGELFNKVAKGKLKEDVAHKYFKQLINAVDYCHSRGVFHRDIKPENILLDENGNLKVSDFGLSALVESKRQDGLLHTPCGTPAYVAPEVIKRKGYDGTKADIWSYDPNLIEMYRKISKAELKCPNWFPPDVCKLLGMMLDPNPDTRIPISIIREHCWFKKEPNVKNKRPVVENNTVSSSGTVLPDQNDCCDGLAAQANGESVAPLSINAFDIISRSAGFDLSRFFDDSFRKKEARFSSRLPANVIISKLEDIAKQLRMKIKKKAAGLMKLEGLEEGRKGVLTIDAEIFEVTPCFHLVEVKKSNGDTLEYQKILKEDIRPALQDIVWVWQSDQQLQSQPSEQELQQTDNQQQQ 430
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu2g02070 430 ProSiteProfiles Protein kinase domain profile. 12 236 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu2g02070 430 Pfam NAF domain 282 340 IPR004041 GO:0007165
Vimu2g02070 430 ProSitePatterns Protein kinases ATP-binding region signature. 18 41 IPR017441 GO:0005524
Vimu2g02070 430 SUPERFAMILY Protein kinase-like (PK-like) 8 237 IPR011009 -
Vimu2g02070 430 CDD CIPK_C 286 400 - -
Vimu2g02070 430 Gene3D Transferase(Phosphotransferase) domain 1 2 278 - -
Vimu2g02070 430 FunFam Maternal embryonic leucine zipper kinase 2 272 - -
Vimu2g02070 430 SMART serkin_6 12 236 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu2g02070 430 PANTHER CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE KINASE-RELATED 4 399 - -
Vimu2g02070 430 FunFam Non-specific serine/threonine protein kinase 280 404 - -
Vimu2g02070 430 Pfam Protein kinase domain 12 193 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu2g02070 430 ProSiteProfiles NAF domain profile. 280 304 IPR018451 GO:0007165
Vimu2g02070 430 ProSitePatterns Serine/Threonine protein kinases active-site signature. 115 127 IPR008271 GO:0004672|GO:0006468
Vimu2g02070 430 Gene3D Kinase associated domain 1, KA1 280 405 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu2g02070 Vimu-Chr2 15390686 15392068 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu2g02070 1 410 CBL-interacting serine-threonine protein kinases AT5G58380 61.148 0.0 550
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CAMKL-CHK1 Vimu2g02070 Pkinase 3.7e-56 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu2g02070 - - gmx:100790905 725.702