Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu2g02066 ATGCCGGAGATCGACCAGGTGGCGGTGGAGGACACTGCCTTGTTCGGAAAATACGAGCTCGGGCGCGTTATCGGGTGCGGCGCCTTCGCGAAGGTGCACTATGCGCGCAACGTGCAGACGGGACAGAGCGTGGCCGTGAAAATCATCAACAAGAAGAAGATAAACGGAACGGGTCTCGTCGGAAACGTGAAGCGTGAAATCACTATCATGAGCAGGCTCCACCACCCCAACATCGTGCGTCTCCACGAGGTTCTCGCTACCAAAAACAAAATTTTCTTCATCATGGACTTCGTCCGCGGCGGAGAGCTCTTCGGGAAGATCTCGAAGGGTCGCTTCTCGGAGGATCTCAGCCGGAAGTACTTCCACCAGCTCATCTCCGCCGTCGGCTACTGCCACTCACGCGGTGTCTTCCACCGCGACCTCAAGCCCGAGAACCTCCTCCTGGATGAGAACGGCGATTTACGGGTCACCGATTTCGGGTTGAGTGCCGTCAGGGACCAGATCCGACCCGACGGGTTACTCCACACGCTTTGCGGAACCCCTGCCTATGTGGCACCCGAGATTTTAAGCAAAAAAGGTTACGATGGTGCCAAGATTGATGTTTGGTCATGCGGGGTCGTTTTGTTCGTTCTCTCCGCGGGTTACTTACCGTTTAACGATCCGAACTTGATGGTAATGTATAAGAAGATTTACAAGGGAGAGTTCCGGTGCCCGCGGTGGATGTCGCCTGAGCTCCGGCGCTTTTTGGCGAAGCTGCTGGACACCAACCCGGAAACGAGGATCACGGTGGACGGCATGCTCCGTGACCCATGGTTCAAAAAAGGGTACAAAGAGATCAAATTTCACGAGGAGGATTACGTGTCCGGGTCGGGTATCGGGTACGGGCCGAAAGACGAGAGAATAATGAATTTGAACGCTTTTGACATAATAAGTTTCTCTGCCGGTTTGGATTTGTCGGGGCTGTTCGGGGACGCCGGCGAGGGTGACCGGTTGGTGACCCAGGAGTCGCCGGAGAAGGTTCTGGAGATGGCAGAGGAGGTGGGGGCGGCAGCGGATATGACCGTGAGGTGGAAGAAGGAGTGCGGGGTGGAGTTAGAAGAGTTCAATGGAAGGTTCGGGTTTGAGGTGGAGGTTTACCGGCTGACGGCGGAGCTTACGGTTGTAGAAGCCCGGAAGAGGCTCGGCGACGGCGTGACGTTTAAAAGCGTTTGGGAGGAGAAGTTGAAGCCTTTGTTGCTTGGAGGTGCGACGACGTCGTATAACAGCGAAGATGAACAAGAACGAGAACAACCTGAGTCGCAGCAGGTTGCCGATGACTGA 1320 0.5553 MPEIDQVAVEDTALFGKYELGRVIGCGAFAKVHYARNVQTGQSVAVKIINKKKINGTGLVGNVKREITIMSRLHHPNIVRLHEVLATKNKIFFIMDFVRGGELFGKISKGRFSEDLSRKYFHQLISAVGYCHSRGVFHRDLKPENLLLDENGDLRVTDFGLSAVRDQIRPDGLLHTLCGTPAYVAPEILSKKGYDGAKIDVWSCGVVLFVLSAGYLPFNDPNLMVMYKKIYKGEFRCPRWMSPELRRFLAKLLDTNPETRITVDGMLRDPWFKKGYKEIKFHEEDYVSGSGIGYGPKDERIMNLNAFDIISFSAGLDLSGLFGDAGEGDRLVTQESPEKVLEMAEEVGAAADMTVRWKKECGVELEEFNGRFGFEVEVYRLTAELTVVEARKRLGDGVTFKSVWEEKLKPLLLGGATTSYNSEDEQEREQPESQQVADD 439
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu2g02066 439 PANTHER CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE KINASE-RELATED 12 399 - -
Vimu2g02066 439 Gene3D Kinase associated domain 1, KA1 300 414 - -
Vimu2g02066 439 FunFam Non-specific serine/threonine protein kinase 8 299 - -
Vimu2g02066 439 ProSitePatterns Protein kinases ATP-binding region signature. 24 47 IPR017441 GO:0005524
Vimu2g02066 439 CDD CIPK_C 305 412 - -
Vimu2g02066 439 SMART serkin_6 18 272 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu2g02066 439 ProSiteProfiles Protein kinase domain profile. 18 272 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu2g02066 439 MobiDBLite consensus disorder prediction 415 439 - -
Vimu2g02066 439 Pfam NAF domain 303 356 IPR004041 GO:0007165
Vimu2g02066 439 ProSitePatterns Serine/Threonine protein kinases active-site signature. 136 148 IPR008271 GO:0004672|GO:0006468
Vimu2g02066 439 ProSiteProfiles NAF domain profile. 299 323 IPR018451 GO:0007165
Vimu2g02066 439 Pfam Protein kinase domain 18 272 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu2g02066 439 Gene3D Transferase(Phosphotransferase) domain 1 9 294 - -
Vimu2g02066 439 FunFam Non-specific serine/threonine protein kinase 9 97 - -
Vimu2g02066 439 MobiDBLite consensus disorder prediction 422 439 - -
Vimu2g02066 439 SUPERFAMILY Protein kinase-like (PK-like) 15 282 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu2g02066 Vimu-Chr2 15365988 15367742 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu2g02066 1 413 CBL-interacting serine-threonine protein kinases AT2G30360 63.805 0.0 538
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CAMKL-CHK1 Vimu2g02066 Pkinase 2.3e-69 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu2g02066 - - gsj:114377188 741.11