Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu2g02062 ATGGGTAATAACAGGTTCAGATTGTCTGATATGATGCCAAATGCATGGTTCTATAAGCTCAAAGATATGAGCAAATCAAGGAAGAAAAATGGTCCTCATGTTATGAAGAACAAAGTTACCTCACCAACAACCTCCCAAAGGTCACAACCTAGATACTCTCATTGTTTCTCCATTGAACCGAACATAACTGGTAAGTTATACAACTCTCCTATTTACACTAAGCACTCAGACAACATATTCATTGATTCACCAAGAAAATCATCTAAAAGAAGAACCAAGAGAAAAACCATTTATAAGCCTTCTCCCACAGTTGTCTCTTCACCAGTCATAGAAAGTTTTAGTTCTCATTCCACAAATAGTTCTTATGAATCAAACTTCCATGAATATCTTTCATCTGAGTCAGAGTGTGACAAGTTCACTATTCCTGACCTGCTTAATGGAGTAGCCTCTGAATGCAGTTGTAGAGTTAGCTCTTCCACCAATGACATCATCATTGACATGAAAAATGAACCATTCACTGGGAATTCTCAAAATCTTGATGGGTTTGACACAATTTCACAATTAGGCCTTCCTCCAATATTGACAAAGCCAGTGAAGTTTGATGATAAGGTCATTGAAGCCATTGAGTTGAGAAGATCAACTAAATTTGATGAGGTAAATTCTCATCAATCTCAAGCTGTTAAAGTTAGCAAAGAGGAAAGCAGTAGAACTAAGAGAGACAGAAAAACCAGTCCAGTATCTAGAATTTCCTCTGCTAATTCTACTGGTATAAGACTTAGAGTCAATTCTCCCAAACTTGCAAGCAAGAAAGGCAAGGCCTCAGTGGATACAGGGTTTCCAGAGGGATTTGCAGTTGTTAAGTCCTCACTTGATCCACAAAGAGACTTCAGGGAATCAATGGTGGAGATGATAGTGGAGAACAATATCCGAGCATCAAAAGATTTGGAGAACTTGCTTGCATGCTATCTTTCACTGAATTCAAGGGAATACCATGATCTCATTGTCAAAGCATTTGAGCAAATTTGGTATGACATGGCTCTACTTGGAATGTAA 1053 0.3808 MGNNRFRLSDMMPNAWFYKLKDMSKSRKKNGPHVMKNKVTSPTTSQRSQPRYSHCFSIEPNITGKLYNSPIYTKHSDNIFIDSPRKSSKRRTKRKTIYKPSPTVVSSPVIESFSSHSTNSSYESNFHEYLSSESECDKFTIPDLLNGVASECSCRVSSSTNDIIIDMKNEPFTGNSQNLDGFDTISQLGLPPILTKPVKFDDKVIEAIELRRSTKFDEVNSHQSQAVKVSKEESSRTKRDRKTSPVSRISSANSTGIRLRVNSPKLASKKGKASVDTGFPEGFAVVKSSLDPQRDFRESMVEMIVENNIRASKDLENLLACYLSLNSREYHDLIVKAFEQIWYDMALLGM 350
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu2g02062 350 PANTHER TRANSCRIPTION REPRESSOR OFP7-RELATED 63 345 IPR038933 GO:0045892
Vimu2g02062 350 MobiDBLite consensus disorder prediction 219 253 - -
Vimu2g02062 350 Pfam DNA-binding domain 1 48 IPR025830 GO:0003677
Vimu2g02062 350 NCBIfam uncharacterized plant-specific domain TIGR01568 283 345 IPR006458 -
Vimu2g02062 350 ProSiteProfiles OVATE domain profile. 285 344 IPR006458 -
Vimu2g02062 350 MobiDBLite consensus disorder prediction 36 51 - -
Vimu2g02062 350 MobiDBLite consensus disorder prediction 229 245 - -
Vimu2g02062 350 Pfam Transcriptional repressor, ovate 289 345 IPR006458 -
Vimu2g02062 350 MobiDBLite consensus disorder prediction 26 51 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu2g02062 Vimu-Chr2 15319399 15320544 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF OFP Vimu2g02062 Ovate 3.7e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu2g02062 - - gmx:100798120 578.941
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu2g02062 2 15319399 15320544 Vimu2g02062 2 15319399 15320544 ECH
Vimu2g02062 2 15319399 15320544 Vimu1g01275 1 10136762 10137904 PCT