Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu2g02060 ATGTATTCCAATAAAGGGTATAGAGATGATCGCATAGCTGAGCCTCGTTACATTGAAACTGACCCAAATGGTAGATATGCTCGGGTTGGAGATATTTTAGGAAAAGGGGCAATGAAGACAGTGTATAAAGCAATTGATGAGGTTCATGGAACAGAAGTTGCATGGAGTCAGGTCAAACTCAATGATGCATTTCGCAAACCAGAGGACTTGGAGAGGCTTTATTTAGAGGTTCATCTCCTCAGCACCCTCAAGCACCAATCCATCATGAGATTCTACACCTCTTGGATTGATGTCAACAATAAGACCTTCAACTTCATTACAGAAATGTTTACTTCAGGGACTCTAAGAGAATACCGGAAGAAATATAAGCACATAGGTCTGAGAGCAATAAAGAGTTGGGCTCGGCAAATCTTACAGGGTCTTGTTTATCTGCATGAACATGATCCTCCAGTAATTCATAGGGACCTCAAATGTGACAATATATTTGTCAATGGCCATCTTGGACAAGTGAAAATTGGTGACCTGGGTCTAGCAGCAATTCTCCATGGTTCCCAACCAGCTCACAGTGTTATAGGCACTCCCGAGTTCATGGCACCAGAATTGTACGAGGAAGAATACAATGAACTAGTTGATGTGTACTCATTTGGCATGTGTGTTTTGGAAATGCTTACATCTGATTATCCATACAGTGAATGTACTAACCCTGCACAGATATACAAAAAAGTAACATCAGGGAAGCTACCAGCAGCGTTTTTCAGGATTGAAGACACAGAAGCACAAAAGTTTATTGGCAAATGTCTAATAGCTGCAGCAGAGAGACCATCTGCTAAAGAATTGTTGCATGATCCATTTCTTTTGTCTAATGATGAATCATCCATGGCAAAGATTGGAATTCAGAAGCCGTTTCTAAATTACAGCGAATTGGAAAAACTTCAACTGAGTGATGATTTACCAATGACTAAAATGTCAATAACTGGGAAGCTGAATTCACAAGATGACACTATCTTTCTCAAAGTGAAAATTTCTGAGAAGGATGACACCCCTGTTGATGTTGCAATAGAGATGGTGAAAGAGTTGGAAATCACAGATTTGGAGCCATCTGATATTGCTCGTATGATTGAAGGAGAGATATCTGTGCTGCTGCCGAATTGGAGGAATAGTAACTGTCCAGACAGCTGCCATACATCCAGTTATAATGATGACAAGGACAATGAAGATCCTCAGCATCATTTCCACTCTATTTCTTCTTGCTCATCATCCCTAGAATCAATAATAGGCTCAGTCAACAGAGTGGATGACTTATTGAATGGATATCATTGGCTCCATGGTATGTCTCCATTGTCCCTACCCCCTACAACAATAGCTACATGTGAAGTGTGCAAGTGTGAATAG 1392 0.4052 MYSNKGYRDDRIAEPRYIETDPNGRYARVGDILGKGAMKTVYKAIDEVHGTEVAWSQVKLNDAFRKPEDLERLYLEVHLLSTLKHQSIMRFYTSWIDVNNKTFNFITEMFTSGTLREYRKKYKHIGLRAIKSWARQILQGLVYLHEHDPPVIHRDLKCDNIFVNGHLGQVKIGDLGLAAILHGSQPAHSVIGTPEFMAPELYEEEYNELVDVYSFGMCVLEMLTSDYPYSECTNPAQIYKKVTSGKLPAAFFRIEDTEAQKFIGKCLIAAAERPSAKELLHDPFLLSNDESSMAKIGIQKPFLNYSELEKLQLSDDLPMTKMSITGKLNSQDDTIFLKVKISEKDDTPVDVAIEMVKELEITDLEPSDIARMIEGEISVLLPNWRNSNCPDSCHTSSYNDDKDNEDPQHHFHSISSCSSSLESIIGSVNRVDDLLNGYHWLHGMSPLSLPPTTIATCEVCKCE 463
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu2g02060 463 PANTHER SERINE/THREONINE-PROTEIN KINASE WNK WITH NO LYSINE -RELATED 12 417 - -
Vimu2g02060 463 Pfam Protein kinase domain 30 285 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu2g02060 463 SMART serkin_6 27 285 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu2g02060 463 ProSiteProfiles Protein kinase domain profile. 27 285 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu2g02060 463 SUPERFAMILY Protein kinase-like (PK-like) 29 316 IPR011009 -
Vimu2g02060 463 ProSitePatterns Serine/Threonine protein kinases active-site signature. 151 163 IPR008271 GO:0004672|GO:0006468
Vimu2g02060 463 Gene3D Transferase(Phosphotransferase) domain 1 110 292 - -
Vimu2g02060 463 FunFam Probable serine/threonine-protein kinase WNK1 12 108 - -
Vimu2g02060 463 Gene3D Phosphorylase Kinase; domain 1 12 108 - -
Vimu2g02060 463 FunFam probable serine/threonine-protein kinase WNK9 110 290 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu2g02060 Vimu-Chr2 15309123 15313039 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu2g02060 9 408 MAP Kinase Kinase Kinase AT3G51630 64.929 0.0 550
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK WNK_NRBP Vimu2g02060 Pkinase 7.8e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu2g02060 K08867 - gmx:100778102 717.998