Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu2g02059 ATGGCTCTTCTCACTCTCATTGCTGTTCTCTTTCTTAACATCAATCTCCATAGTGTCACTGCTGATTATGGTGGTTGGCAGGGTGGTCATGCCACTTTCTATGGTGGGGGTGATGCTTCTGGCACAATGGGTGGAGCATGTGGGTATGGAAATCTGTATAGCCAGGGTTATGGAACAGACACTGTAGCTCTAAGCACTGCTTTGTTCAACAATGGCTTAAGCTGTGGATCTTGCTACGAAATGAGATGTGATGATGACCCAAGATGGTGCAAACCTGGCTCTATTATCGTCACTGCTACTAACTTCTGTCCCCCAAATCCATCTTTGCCAAACAACAATGGTGGTTGGTGCAATCCCCCTTTGCAACACTTTGATATGGCTGAACCTGCCTTCCTTCAAATTGCAGAATATAGAGCTGGAATTGTCCCAGTGGCCTTCAGAAGGGTTCCTTGTGTGAAGAAGGGAGGAATAAGGTTCACTATCAATGGTCACTCTTACTTCAACCTAGTTTTGATCACCAATGTGGCTGGTGCTGGGGATGTGCATTCAGTGTCCATCAAAGGGTCAAAAACTGGGTGGCAATCCATGTCAAGAAATTGGGGCCAAAACTGGCAGAGCAACTCCTACCTCAATGGACAAGCCCTTTCTTTTCAAGTCACCACCAGTGATGGCAGAACTGTGGCAAGCTACAATGTGGCACCAGGGAATTGGCAATTTGGTCAGACCTTCCAAGGAGGCCAATTCTAG 747 0.4685 MALLTLIAVLFLNINLHSVTADYGGWQGGHATFYGGGDASGTMGGACGYGNLYSQGYGTDTVALSTALFNNGLSCGSCYEMRCDDDPRWCKPGSIIVTATNFCPPNPSLPNNNGGWCNPPLQHFDMAEPAFLQIAEYRAGIVPVAFRRVPCVKKGGIRFTINGHSYFNLVLITNVAGAGDVHSVSIKGSKTGWQSMSRNWGQNWQSNSYLNGQALSFQVTTSDGRTVASYNVAPGNWQFGQTFQGGQF 248
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu2g02059 248 SUPERFAMILY Barwin-like endoglucanases 25 174 IPR036908 -
Vimu2g02059 248 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 166 245 IPR007117 -
Vimu2g02059 248 PRINTS Expansin signature 114 131 IPR002963 GO:0009664
Vimu2g02059 248 PRINTS Expansin signature 131 144 IPR002963 GO:0009664
Vimu2g02059 248 PRINTS Expansin signature 83 94 IPR002963 GO:0009664
Vimu2g02059 248 PRINTS Expansin signature 56 70 IPR002963 GO:0009664
Vimu2g02059 248 PRINTS Expansin signature 95 105 IPR002963 GO:0009664
Vimu2g02059 248 PRINTS Expansin signature 231 247 IPR002963 GO:0009664
Vimu2g02059 248 PRINTS Expansin signature 155 167 IPR002963 GO:0009664
Vimu2g02059 248 PRINTS Expansin signature 202 223 IPR002963 GO:0009664
Vimu2g02059 248 PRINTS Expansin signature 167 188 IPR002963 GO:0009664
Vimu2g02059 248 SUPERFAMILY PHL pollen allergen 153 245 IPR036749 -
Vimu2g02059 248 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 44 156 IPR007112 -
Vimu2g02059 248 FunFam Expansin 156 248 - -
Vimu2g02059 248 FunFam Expansin 15 152 - -
Vimu2g02059 248 Gene3D - 155 248 IPR036749 -
Vimu2g02059 248 Gene3D - 12 151 IPR036908 -
Vimu2g02059 248 SMART dpbb_1 61 146 IPR007112 -
Vimu2g02059 248 PRINTS Expansin/Lol pI family signature 65 83 IPR007118 GO:0005576
Vimu2g02059 248 PRINTS Expansin/Lol pI family signature 25 40 IPR007118 GO:0005576
Vimu2g02059 248 PRINTS Expansin/Lol pI family signature 193 207 IPR007118 GO:0005576
Vimu2g02059 248 PRINTS Expansin/Lol pI family signature 43 61 IPR007118 GO:0005576
Vimu2g02059 248 PRINTS Expansin/Lol pI family signature 231 245 IPR007118 GO:0005576
Vimu2g02059 248 PRINTS Expansin/Lol pI family signature 139 155 IPR007118 GO:0005576
Vimu2g02059 248 CDD DPBB_EXPA_N 25 151 - -
Vimu2g02059 248 Pfam Expansin C-terminal domain 157 234 IPR007117 -
Vimu2g02059 248 PANTHER EXPANSIN-A15 6 248 IPR002963 GO:0009664
Vimu2g02059 248 Pfam Lytic transglycolase 61 145 IPR009009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu2g02059 Vimu-Chr2 15289942 15292211 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu2g02059 2 248 Expansin Gene Family AT2G40610 79.435 3.07e-149 414
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu2g02059 - K20628 gmx:100499976 452.21
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu2g02059 2 15289942 15292211 Vimu2g02059 2 15289942 15292211 ECH
Vimu2g02059 2 15289942 15292211 Vimu3g01145 3 18632293 18633389 ECH
Vimu2g02059 2 15289942 15292211 Vimu1g01269 1 10078329 10080507 ECH
Vimu2g02059 2 15289942 15292211 Vimu1g01269 1 10078329 10080507 PCT