Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu2g02046 ATGGGAAAGCTACACAAACATAGCATATTTTCAAAACTCCCTTGTTCTTTTCTGCTCACTCTCATGGCTAGAAAGAAGGTCGACCTTACTTTCATAACCAAAACCTCAAAGAGGAAGGCAACCTTCAAGAAAAGGAAAAATGGTTTGATAAAAAAGATCGGTGAAATCAGCATCCTCTGTGGGATTCAAGCCTGTGCTATAATCTACACACCAGATGAACCTGAACAGCCGGAGGTTTGGCCGTCCGAGGAGGGAGTTGAAAGTGCTATCACCAGGTTCAGGAGTGTTTCTGAACTGGAGCAAAGCAAGAAAATGTTCTGTCAGGAAAGCTTCCTGAGGCAAAGGATCGTTAAGGTCCAAGAACAGTTGAAGAAAGTGAGGAATGAGAATAGAAAGAAAGAGATTAACCATCTCATTTCTCAATACATCACTGTTGGGAACAACTTTGAGACTGCCAACATCATTGATCTCAATGATATCTCATTCTTGGCTGATCAATGCTTGGAGGACATCACAAAGAAAATCGCTGCTCGCAAAGCCCAGATGGGGGCACCAGTTACTGAAAATAATGGTGGAGAAACTGTGACTCGCCATGGAGAACAAGCACGGGTGAACCATGTCCAAGTTCAAGGGCCTTACACTGATGTTGATGCCATGCAGAATCTGAACTGGTCTGCTGATATCATCAATGCTGCTGCTCCCAATGAGATGTTATCATTGGAAGATGTTAATGTCCAAAGTGGTTGGCTTAACCAATATATCCCTTGA 768 0.431 MGKLHKHSIFSKLPCSFLLTLMARKKVDLTFITKTSKRKATFKKRKNGLIKKIGEISILCGIQACAIIYTPDEPEQPEVWPSEEGVESAITRFRSVSELEQSKKMFCQESFLRQRIVKVQEQLKKVRNENRKKEINHLISQYITVGNNFETANIIDLNDISFLADQCLEDITKKIAARKAQMGAPVTENNGGETVTRHGEQARVNHVQVQGPYTDVDAMQNLNWSADIINAAAPNEMLSLEDVNVQSGWLNQYIP 255
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu2g02046 255 SMART madsneu2 22 82 IPR002100 GO:0003677|GO:0046983
Vimu2g02046 255 ProSiteProfiles MADS-box domain profile. 22 70 IPR002100 GO:0003677|GO:0046983
Vimu2g02046 255 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 31 72 IPR002100 GO:0003677|GO:0046983
Vimu2g02046 255 FunFam Agamous-like MADS-box protein AGL80 34 120 - -
Vimu2g02046 255 PRINTS MADS domain signature 44 59 IPR002100 GO:0003677|GO:0046983
Vimu2g02046 255 PRINTS MADS domain signature 24 44 IPR002100 GO:0003677|GO:0046983
Vimu2g02046 255 PANTHER MADS BOX PROTEIN 24 148 - -
Vimu2g02046 255 CDD MADS_SRF_like 23 105 IPR033897 GO:0000981|GO:0000987|GO:0045944
Vimu2g02046 255 Coils Coil 109 136 - -
Vimu2g02046 255 Gene3D - 35 143 IPR036879 GO:0003677|GO:0046983
Vimu2g02046 255 SUPERFAMILY SRF-like 24 117 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu2g02046 Vimu-Chr2 15232752 15233652 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu2g02046 22 252 Type I MADS-box Gene Family AT5G48670 37.229 2.51e-40 140
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Vimu2g02046 SRF-TF 2e-15 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu2g02046 - - vra:106752448 497.664
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu2g02046 2 15232752 15233652 Vimu2g02046 2 15232752 15233652 ECH