Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu2g02045 ATGACTAGAGCCAAGATCGAACTTGCTTACATAACAGATCCTGCAAAGAGGAAAGCAACTTTCAAGAAAAGGAAAAATGGTTTGATGAAAAAGATCAGGGAAATCACTGTCCTTTGTGGGATTGATGCATGTGCTGTAGTGTATAGTCCTGATCTGCCTAACAAGCCAGAGGTTTGGCCATCTGAATCAGAAGCCAGAAATGTGATTTCCAAGTTCAATGGTGTGTCTGAGGCTGAGAAAAGAAAGAAAATGTTCTGCCAAGAAAGCTTTATAAGACAGAGAATTGACAAAGGCAAAGAGCAGCTGAAGAAACTGAAGAATGAAAATAGGAAGAGGGAGATTAGCCTTCTCATGTGTGAATACCTCACTCATGGAGGCAACAACCTTGACAGTAACAACATGAGCTATCTCAAGGACTTTTCATTCTTCACTGATCAAAACTTGGATGAAATTAGAAACAAAATCACTATGCTCCAAACCCAAGAGGAGACACCAGAAACCATGGCTCAAGGAGACCAAGCACAGGTTCATGTGCCAAAGACCAATATTTCTAGAAAAAACTAA 564 0.4025 MTRAKIELAYITDPAKRKATFKKRKNGLMKKIREITVLCGIDACAVVYSPDLPNKPEVWPSESEARNVISKFNGVSEAEKRKKMFCQESFIRQRIDKGKEQLKKLKNENRKREISLLMCEYLTHGGNNLDSNNMSYLKDFSFFTDQNLDEIRNKITMLQTQEETPETMAQGDQAQVHVPKTNISRKN 187
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu2g02045 187 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 161 - -
Vimu2g02045 187 SMART madsneu2 1 61 IPR002100 GO:0003677|GO:0046983
Vimu2g02045 187 ProSiteProfiles MADS-box domain profile. 1 49 IPR002100 GO:0003677|GO:0046983
Vimu2g02045 187 Coils Coil 88 115 - -
Vimu2g02045 187 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Vimu2g02045 187 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Vimu2g02045 187 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 51 IPR002100 GO:0003677|GO:0046983
Vimu2g02045 187 MobiDBLite consensus disorder prediction 164 181 - -
Vimu2g02045 187 FunFam Agamous-like MADS-box protein AGL80 13 101 - -
Vimu2g02045 187 SUPERFAMILY SRF-like 2 96 IPR036879 GO:0003677|GO:0046983
Vimu2g02045 187 CDD MADS_SRF_like 2 84 IPR033897 GO:0000981|GO:0000987|GO:0045944
Vimu2g02045 187 MobiDBLite consensus disorder prediction 164 187 - -
Vimu2g02045 187 Gene3D - 13 116 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu2g02045 Vimu-Chr2 15213328 15214024 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu2g02045 1 151 Type I MADS-box Gene Family AT3G05860 45.695 4.63e-37 127
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Vimu2g02045 SRF-TF 5e-17 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu2g02045 - - gmx:100787546 201.06
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu2g02045 2 15213328 15214024 Vimu2g02045 2 15213328 15214024 ECH